RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CEP76Q8TAP6 659 aa14.17□□□□□ -0.14
UPF1-204ENST00000596842 ABHD4Q8TB40 342 aa14.17□□□□□ -0.14
UPF1-204ENST00000596842 LRRN3Q9H3W5 708 aa14.17□□□□□ -0.14
UPF1-204ENST00000596842 ASCC3Q8N3C0 2202 aaKnown RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 DPTQ07507 201 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 FGL2Q14314 439 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 HES5Q5TA89 166 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 FAAP20Q6NZ36 180 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 WDR88Q6ZMY6 472 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 RANBP3LQ86VV4 465 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 LRRC28Q86X40 367 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 BOLLQ8N9W6 283 aaKnown RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 TMEM239Q8WW34 195 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 MS4A3Q96HJ5 214 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 PDCD1LG2Q9BQ51 273 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 OR51J1Q9H342 316 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 AUNIPQ9H7T9 357 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 NIPAL2Q9H841 368 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 POLMQ9NP87 494 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 PRSS16Q9NQE7 514 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3DA0A087WVF3 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3IA0A087WXS9 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3EA0A087X179 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3KA0A087X1G2 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3FA6NER0 549 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 RIIAD1A6NNX1 92 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3LB9A6J9 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 FKTNO75072 461 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 ZGLP1P0C6A0 271 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3HP0C7X1 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3GQ6DHY5 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3CQ6IPX1 549 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 FRRS1Q6ZNA5 592 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TBC1D3Q8IZP1 549 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 KRCC1Q9NPI7 259 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 PHPT1Q9NRX4 125 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 OR6C2Q9NZP2 312 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 EYSQ5T1H1 3165 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 RFPL3O75679 317 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TCRBP04435 133 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 RAB3BP20337 219 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 RPL4P36578 427 aaKnown RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 HSD17B2P37059 387 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 C2orf27AQ580R0 203 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 RNLSQ5VYX0 342 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 NIPAL3Q6P499 406 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 IL17RCQ8NAC3 791 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 OR11H4Q8NGC9 324 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 COQ8AQ8NI60 647 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 WFIKKN2Q8TEU8 576 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 HS6ST2Q96MM7 605 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 TTYH1Q9H313 450 aaPredicted RBP14.16□□□□□ -0.14
UPF1-204ENST00000596842 STARD5Q9NSY2 213 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 CALML5Q9NZT1 146 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 GNG8Q9UK08 70 aa14.16□□□□□ -0.14
UPF1-204ENST00000596842 MTCL1Q9Y4B5 1905 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 LRRK1Q38SD2 2015 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 GATBO75879 557 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 CTRB1P17538 263 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 F8A1P23610 371 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 MAZP56270 477 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 SRSF5Q13243 272 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 OR1Q1Q15612 314 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 CTRB2Q6GPI1 263 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 CD200R1LQ6Q8B3 271 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 NRROSQ86YC3 692 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 LRRC25Q8N386 305 aaPredicted RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 TMIEQ8NEW7 156 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 OR52E2Q8NGJ4 325 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 OR52N1Q8NH53 320 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 SNX33Q8WV41 574 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 GIMAP1Q8WWP7 306 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 SMPDL3BQ92485 455 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 CREB3L1Q96BA8 519 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 BPIFA2Q96DR5 249 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 TEAD3Q99594 435 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 C12orf57Q99622 126 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 OR10A4Q9H209 315 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 PCDHB16Q9NRJ7 776 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 OBSL1O75147 1896 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 RPP14O95059 124 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 ANXA3P12429 323 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 CMPK1P30085 196 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 BMP8BP34820 402 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 FOXK2Q01167 660 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 CRYZQ08257 329 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 SNTB2Q13425 540 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 SSX6Q7RTT6 188 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 BMP8AQ7Z5Y6 402 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 GLRX5Q86SX6 157 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 OAFQ86UD1 273 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 GJD3Q8N144 294 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 OR2T35Q8NGX2 323 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 MENTQ9BUN1 341 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 GTPBP2Q9BX10 602 aaKnown RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 TMEM74BQ9NUR3 256 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 TBX21Q9UL17 535 aa14.15□□□□□ -0.14
UPF1-204ENST00000596842 PRKNO60260 465 aaPredicted RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 CDC123O75794 336 aaPredicted RBP14.15□□□□□ -0.14
UPF1-204ENST00000596842 AHCYP23526 432 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms