RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 QRSL1Q9H0R6 528 aaKnown RBP13.53□□□□□ -0.24
TRIM28-205ENST00000595028 COQ10BQ9H8M1 238 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 TPT1P8Q9HAU6 139 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 AGAP5A6NIR3 686 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 A6NNC1 897 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 SS18L1O75177 396 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 CTAG2O75638 210 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 CGAP01215 116 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 CD8BP10966 210 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 NID1P14543 1247 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 PGCP20142 388 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 RPS4Y1P22090 263 aaKnown RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF239Q16600 458 aaKnown RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 C3orf33Q6P1S2 294 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 FAM214BQ7L5A3 538 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 LINC01560Q8TB33 94 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 STON2Q8WXE9 905 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 GTF2H4Q92759 462 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 AURKBQ96GD4 344 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 GPATCH1Q9BRR8 931 aaKnown RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 SRXN1Q9BYN0 137 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 OPN3Q9H1Y3 402 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 EXOSC3Q9NQT5 275 aaKnown RBP13.52□□□□□ -0.25
TRIM28-205ENST00000595028 P2RX2Q9UBL9 471 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 PROCRQ9UNN8 238 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 EMC9Q9Y3B6 208 aa13.52□□□□□ -0.25
TRIM28-205ENST00000595028 DSPPQ9NZW4 1301 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 FAM221AA4D161 298 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 CLDN24A6NM45 220 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 PLGP00747 810 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 NR2F1P10589 423 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 ETFAP13804 333 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 HOXB9P17482 250 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 PCYT1AP49585 367 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 ART1P52961 327 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 CARD18P57730 90 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 SESN3P58005 492 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 DSTNP60981 165 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 KCNJ10P78508 379 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 DAZAP2Q15038 168 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 MAPK11Q15759 364 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 TMEM176BQ3YBM2 270 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 SLC2A7Q6PXP3 512 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF474Q6S9Z5 364 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 FUNDC1Q8IVP5 155 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 CMIPQ8IY22 773 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 OR6K3Q8NGY3 331 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 RNF128Q8TEB7 428 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 WDR60Q8WVS4 1066 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 TMEM234Q8WY98 164 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 OSTF1Q92882 214 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 CPNE4Q96A23 557 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 PAIP1Q9H074 479 aaKnown RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 TIGARQ9NQ88 270 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 GLRX2Q9NS18 164 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 RASSF1Q9NS23 344 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 ACER3Q9NUN7 267 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 DNAJB12Q9NXW2 375 aaKnown RBP13.51□□□□□ -0.25
TRIM28-205ENST00000595028 CLEC4AQ9UMR7 237 aa13.51□□□□□ -0.25
TRIM28-205ENST00000595028 A0A096LPI6 279 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 NR5A2O00482 541 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 PABPC4LP0CB38 370 aaKnown RBP13.5□□□□□ -0.25
TRIM28-205ENST00000595028 EPXP11678 715 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 SLC7A1P30825 629 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 CCKARP32238 428 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 CD79BP40259 229 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 CRATP43155 626 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 ATP4BP51164 291 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 CTBP2P56545 445 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 IRX1P78414 480 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-205ENST00000595028 MERTKQ12866 999 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 SQLEQ14534 574 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 BLOC1S3Q6QNY0 202 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 PLEKHM3Q6ZWE6 761 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 ATP6V1C2Q8NEY4 427 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 CNOT9Q92600 299 aaKnown RBP13.5□□□□□ -0.25
TRIM28-205ENST00000595028 PMM1Q92871 262 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 SPDL1Q96EA4 605 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 POLDIP3Q9BY77 421 aaKnown RBP13.5□□□□□ -0.25
TRIM28-205ENST00000595028 CLEC4MQ9H2X3 399 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-205ENST00000595028 TMEM45AQ9NWC5 275 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 TESMINQ9Y4I5 508 aa13.5□□□□□ -0.25
TRIM28-205ENST00000595028 UQCRHLA0A096LP55 91 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 SH3D21A4FU49 640 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 EDF1O60869 148 aaKnown RBP13.49□□□□□ -0.25
TRIM28-205ENST00000595028 ADAM11O75078 769 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 BCHEP06276 602 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 DBIP07108 87 aaKnown RBP13.49□□□□□ -0.25
TRIM28-205ENST00000595028 AGTR1P30556 359 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 RYKP34925 604 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 CRISP3P54108 245 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 FAM27E3Q08E93 113 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 GNA13Q14344 377 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 LRIF1Q5T3J3 769 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 ARFGAP2Q8N6H7 521 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF563Q8TA94 476 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 ABHD3Q8WU67 409 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 ROBO4Q8WZ75 1007 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 REXO5Q96IC2 774 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms