RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 RNF144AP50876 292 aaPredicted RBP15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 ZNF239Q16600 458 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 ZSWIM7Q19AV6 140 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 C6orf10Q5SRN2 563 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 DNAJC14Q6Y2X3 702 aaPredicted RBP15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 ARFGAP2Q8N6H7 521 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 RNF128Q8TEB7 428 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 NINJ1Q92982 152 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 NPAS1Q99742 590 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 GPATCH1Q9BRR8 931 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 MTHFD2LQ9H903 347 aaPredicted RBP15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 SLCO1B3Q9NPD5 702 aa15.89■□□□□ 0.13
SHKBP1-204ENST00000594862 MED13LQ71F56 2210 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 SETD2Q9BYW2 2564 aaPredicted RBP15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 AGAP5A6NIR3 686 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 CGAP01215 116 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 DBIP07108 87 aaKnown RBP15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 POU2F1P14859 743 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 APOBEC1P41238 236 aaKnown RBP15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 HTR3AP46098 478 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 KCNJ5P48544 419 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 IDH3AP50213 366 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 CRISP3P54108 245 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 KCNJ10P78508 379 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 CHRNEQ04844 493 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 SNTB1Q13884 538 aaKnown RBP15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 TOMM34Q15785 309 aaPredicted RBP15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 MAPK14Q16539 360 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 TMEM176BQ3YBM2 270 aaPredicted RBP15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 PEX5LQ8IYB4 626 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 SLC43A2Q8N370 569 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 ZNF563Q8TA94 476 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 WDR60Q8WVS4 1066 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 MAGEB18Q96M61 343 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 SIKE1Q9BRV8 207 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 SLC38A1Q9H2H9 487 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 RABEP2Q9H5N1 569 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 TPT1P8Q9HAU6 139 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 PLSCR4Q9NRQ2 329 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 ACER3Q9NUN7 267 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 ZNF226Q9NYT6 803 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 TESMINQ9Y4I5 508 aa15.88■□□□□ 0.13
SHKBP1-204ENST00000594862 CENPVL1A0A0U1RR11 272 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 PPP3CBP16298 524 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 CRATP43155 626 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 ATP4BP51164 291 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 AQP5P55064 265 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 SESN3P58005 492 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 RAC3P60763 192 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 DSTNP60981 165 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 SYPL1Q16563 259 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 TMEM201Q5SNT2 666 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 GRINAQ7Z429 371 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 ZNF440Q8IYI8 595 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 ANKFN1Q8N957 763 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 OR9I1Q8NGQ6 314 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 LINC01560Q8TB33 94 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 PNPT1Q8TCS8 783 aaKnown RBP15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 CKAP2Q8WWK9 683 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 KLHDC3Q9BQ90 382 aa15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 OPN3Q9H1Y3 402 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-204ENST00000594862 C16orf97H3BN30 126 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 FAAHO00519 579 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 OPN1LWP04000 364 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 CHRM4P08173 479 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 NID1P14543 1247 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 IL7RP16871 459 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 RPS4Y1P22090 263 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 PPIBP23284 216 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 UGT2B10P36537 528 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 CLK1P49759 484 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 MAP2K6P52564 334 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 CSNK2A1P68400 391 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 MERTKQ12866 999 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 FADDQ13158 208 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 ZNF474Q6S9Z5 364 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 BEND4Q6ZU67 534 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 PLEKHM3Q6ZWE6 761 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 FCRLAQ7L513 359 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 ARMC7Q9H6L4 198 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 COQ10BQ9H8M1 238 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 KLHL9Q9P2J3 617 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 KLHL13Q9P2N7 655 aa15.86■□□□□ 0.13
SHKBP1-204ENST00000594862 A0A096LPI6 279 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 PRAMEF27A3QJZ7 478 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 DNPH1O43598 174 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 EFNA2O43921 213 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 PRKD3O94806 890 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 SHC1P29353 583 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 AGTR1P30556 359 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 MVDP53602 400 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 SQLEQ14534 574 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 LIN52Q52LA3 116 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 SYT14P1Q58G82 188 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 COX20Q5RI15 118 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 PRAMEF8Q5VWM4 474 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 PRAMEF7Q5VXH5 474 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 BLOC1S3Q6QNY0 202 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 OLIG3Q7RTU3 272 aa15.85■□□□□ 0.13
SHKBP1-204ENST00000594862 CDC20BQ86Y33 519 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms