RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	KLF8	O95600	359 aa	Predicted RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PSKH1	P11801	424 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	HOXB2	P14652	356 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	NDUFB7	P17568	137 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ELAVL4	P26378	380 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ACTR1B	P42025	376 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CDKN1B	P46527	198 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	GMFB	P60983	142 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	RAB8A	P61006	207 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	GALK2	Q01415	458 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SMAD2	Q15796	467 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	RNASE12	Q5GAN4	147 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PDZK1	Q5T2W1	519 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KIAA1324	Q6UXG2	1013 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	DCXR	Q7Z4W1	244 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KLHL6	Q8WZ60	621 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MRPL48	Q96GC5	212 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMEM80	Q96HE8	168 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMED9	Q9BVK6	235 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CDCA4	Q9BXL8	241 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MIXL1	Q9H2W2	232 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MOV10	Q9HCE1	1003 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	EQTN	Q9NQ60	294 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	RXFP3	Q9NSD7	469 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TXNL4B	Q9NX01	149 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MAT2B	Q9NZL9	334 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SEC14L3	Q9UDX4	400 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	NDRG2	Q9UN36	371 aa	Known RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	NTNG1	Q9Y2I2	539 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PLEKHM1	Q9Y4G2	1056 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SPTB	P11277	2137 aa		10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KIF26A	Q9ULI4	1882 aa	Predicted RBP	10.79	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TSPAN11	A1L157	253 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TOX3	O15405	576 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	HR	O43593	1189 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CSF3	P09919	207 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MEOX2	P50222	304 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CCR5	P51681	352 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	GINS1	Q14691	196 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LARS2	Q15031	903 aa	Known RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	HIKESHI	Q53FT3	197 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PRAMEF14	Q5SWL7	426 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PIP5KL1	Q5T9C9	394 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PRAMEF13	Q5VWM6	474 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	REEP3	Q6NUK4	255 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMEM184A	Q6ZMB5	413 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PDZD3	Q86UT5	571 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KRT78	Q8N1N4	520 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TM9SF4	Q92544	642 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PIK3R3	Q92569	461 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	EAF1	Q96JC9	268 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TAPBPL	Q9BX59	468 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SGPP1	Q9BX95	441 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	BHLHE41	Q9C0J9	482 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ASCL3	Q9NQ33	180 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CNIH4	Q9P003	139 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SSR3	Q9UNL2	185 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	DMD	P11532	3685 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PRAMEF27	A3QJZ7	478 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CAPN5	O15484	640 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TRIM3	O75382	744 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SCG5	P05408	212 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	GP1BA	P07359	652 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ARAF	P10398	606 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PPIB	P23284	216 aa	Known RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	BUD31	P41223	144 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TAS2R38	P59533	333 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SNAPC1	Q16533	368 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMEM196	Q5HYL7	178 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZNF311	Q5JNZ3	666 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	C18orf63	Q68DL7	685 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZNF770	Q6IQ21	691 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PODNL1	Q6PEZ8	512 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	FAM122B	Q7Z309	247 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZNF438	Q7Z4V0	828 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TAF8	Q7Z7C8	310 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SLC30A8	Q8IWU4	369 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SHISA5	Q8N114	240 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	OR52P1P	Q8NH57	321 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PCNP	Q8WW12	178 aa	Known RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CCNL2	Q96S94	520 aa	Predicted RBP	10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SRR	Q9GZT4	340 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	FOLH1B	Q9HBA9	442 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LRFN1	Q9P244	771 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CA5B	Q9Y2D0	317 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	STARD10	Q9Y365	291 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CMAHP	Q9Y471	501 aa		10.78	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CCDC182	A6NF36	153 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	NARS	O43776	548 aa	Known RBP	10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMPRSS11D	O60235	418 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LCMT2	O60294	686 aa	Known RBP	10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	OR4E1	P0C645	316 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CCNYL3	P0C7X3	344 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ACADL	P28330	430 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MPI	P34949	423 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KIR2DL3	P43628	341 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MAPK12	P53778	367 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	RBBP4	Q09028	425 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	HYAL2	Q12891	473 aa		10.77	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	HEPACAM	Q14CZ8	416 aa		10.77	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms