RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 THY1P04216 161 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 CCL3P10147 92 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 GSTM3P21266 225 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 CBLP22681 906 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 HOXD11P31277 338 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 RYKP34925 604 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 APOBEC1P41238 236 aaKnown RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 CCR4P51679 360 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 DEFB109BQ30KR1 87 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 NDUFAF6Q330K2 333 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 ZNF468Q5VIY5 522 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 TIGD3Q6B0B8 471 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 C1orf94Q6P1W5 598 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 IZUMO2Q6UXV1 221 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 ZNF730Q6ZMV8 503 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 ATG4DQ86TL0 474 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 ZNF227Q86WZ6 799 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 CADM2Q8N3J6 435 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 ATG16L2Q8NAA4 619 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 OR2M3Q8NG83 312 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 OR4K5Q8NGD3 323 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 MAGEE2Q8TD90 523 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 SNRNP27Q8WVK2 155 aaKnown RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 TMEM239Q8WW34 195 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 ZBTB8AQ96BR9 441 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 C3orf49Q96BT1 292 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 SH3YL1Q96HL8 342 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 MRGPRX4Q96LA9 322 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 SMAD5Q99717 465 aaKnown RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 FAM173AQ9BQD7 235 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 PROK2Q9HC23 129 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 GALNT9Q9HCQ5 603 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 SMPD3Q9NY59 655 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 TAS2R10Q9NYW0 307 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 KIF17Q9P2E2 1029 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 POFUT2Q9Y2G5 429 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 KLF13Q9Y2Y9 288 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 MED31Q9Y3C7 131 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 LRRC42Q9Y546 428 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 K7ENP7 123 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 OR10H3O60404 316 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 NUDT14O95848 222 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 CD46P15529 392 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 IGFBP5P24593 272 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 CCL11P51671 97 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 RPS6KA3P51812 740 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 ZNF41P51814 821 aaPredicted RBP13.9□□□□□ -0.18
SS18-215ENST00000580642 POLR2HP52434 150 aaKnown RBP13.9□□□□□ -0.18
SS18-215ENST00000580642 CTBP2P56545 445 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 TLE3Q04726 772 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 QPRTQ15274 297 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 OR1C1Q15619 314 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 INO80CQ6PI98 192 aaPredicted RBP13.9□□□□□ -0.18
SS18-215ENST00000580642 TTC33Q6PID6 262 aaPredicted RBP13.9□□□□□ -0.18
SS18-215ENST00000580642 TBPL2Q6SJ96 375 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 IGFL3Q6UXB1 125 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 CDK20Q8IZL9 346 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 WDSUB1Q8N9V3 476 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 MDS2Q8NDY4 140 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 OR4K17Q8NGC6 315 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 OR1J4Q8NGS1 313 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 PIGXQ8TBF5 258 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 GNPDA2Q8TDQ7 276 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 FEVQ99581 238 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 PRR14Q9BWN1 585 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 Q9H521 79 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 RAB26Q9ULW5 256 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 BOKQ9UMX3 212 aaPredicted RBP13.9□□□□□ -0.18
SS18-215ENST00000580642 EXPH5Q8NEV8 1989 aa13.9□□□□□ -0.18
SS18-215ENST00000580642 TMEM8BA6NDV4 472 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 ELOA3DA6NLF2 546 aaPredicted RBP13.89□□□□□ -0.19
SS18-215ENST00000580642 H0YAE9 185 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 SLC25A12O75746 678 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 NTN1O95631 604 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 PRKCAP17252 672 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 FPR3P25089 353 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 MASP1P48740 699 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 RNF144AP50876 292 aaPredicted RBP13.89□□□□□ -0.19
SS18-215ENST00000580642 DAPP51397 102 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 UGT2B15P54855 530 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 DSCR4P56555 118 aaPredicted RBP13.89□□□□□ -0.19
SS18-215ENST00000580642 TMPRSS3P57727 454 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 PRKCDQ05655 676 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 SEC23BQ15437 767 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 ELOA3BQ3SY89 546 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 WLSQ5T9L3 541 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 SLC25A25Q6KCM7 469 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 LINC00696Q6ZRV3 163 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 TMPRSS11FQ6ZWK6 438 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 MDGA2Q7Z553 956 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 NKAIN4Q8IVV8 208 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 SLC43A2Q8N370 569 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 GALNT4Q8N4A0 578 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 TMEM178AQ8NBL3 297 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 AQP11Q8NBQ7 271 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 FDCSPQ8NFU4 85 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 ELOA3Q8NG57 546 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 OR6S1Q8NH40 331 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 C1GALT1C1Q96EU7 318 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms