RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 VPS33AQ96AX1 596 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 ZNF524Q96C55 264 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 DACH2Q96NX9 599 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 RAD21L1Q9H4I0 556 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 COQ10BQ9H8M1 238 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 PLSCR4Q9NRQ2 329 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 SERINC1Q9NRX5 453 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 RASSF1Q9NS23 344 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 ACER3Q9NUN7 267 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 ELOVL5Q9NYP7 299 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 P2RX2Q9UBL9 471 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 PRDM4Q9UKN5 801 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 PROCRQ9UNN8 238 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 OTOGQ6ZRI0 2925 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 AKAP9Q99996 3911 aa13.29□□□□□ -0.28
SS18-212ENST00000579061 PLGP00747 810 aaPredicted RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 CD79BP40259 229 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 APOBEC1P41238 236 aaKnown RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 CTBP2P56545 445 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 SESN3P58005 492 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 GNA13Q14344 377 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 ZNF239Q16600 458 aaKnown RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 PPP4R4Q6NUP7 873 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 BLOC1S3Q6QNY0 202 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 ZNF474Q6S9Z5 364 aaPredicted RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 DNAJC14Q6Y2X3 702 aaPredicted RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 LURAP1LQ8IV03 231 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 FUNDC1Q8IVP5 155 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 ARFGAP2Q8N6H7 521 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 LINC01560Q8TB33 94 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 PNPT1Q8TCS8 783 aaKnown RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 SLC25A43Q8WUT9 341 aaPredicted RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 REXO5Q96IC2 774 aaKnown RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 SLC39A3Q9BRY0 314 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 PAIP1Q9H074 479 aaKnown RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 GP6Q9HCN6 339 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 DNAJB12Q9NXW2 375 aaKnown RBP13.28□□□□□ -0.28
SS18-212ENST00000579061 NDRG3Q9UGV2 375 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 PCDHB14Q9Y5E9 798 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 AKAP6Q13023 2319 aa13.28□□□□□ -0.28
SS18-212ENST00000579061 A0A096LPI6 279 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 SH3D21A4FU49 640 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 TMEM247A6NEH6 219 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 FAAHO00519 579 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 DBIP07108 87 aaKnown RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 HOXB9P17482 250 aaPredicted RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 FKBP2P26885 142 aaKnown RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 SLC7A1P30825 629 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 CPOXP36551 454 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 CRATP43155 626 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 CRISP3P54108 245 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 RAC3P60763 192 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 DSTNP60981 165 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 FADDQ13158 208 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 RNPS1Q15287 305 aaKnown RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 MAPK11Q15759 364 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 GTDC1Q4AE62 458 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 LRIF1Q5T3J3 769 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 PLEKHM3Q6ZWE6 761 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 PEX5LQ8IYB4 626 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 SLC43A2Q8N370 569 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 RNF128Q8TEB7 428 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 WDR60Q8WVS4 1066 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 SPDL1Q96EA4 605 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 GPATCH1Q9BRR8 931 aaKnown RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 SIKE1Q9BRV8 207 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 POLDIP3Q9BY77 421 aaKnown RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 QRSL1Q9H0R6 528 aaKnown RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 OPN3Q9H1Y3 402 aaPredicted RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 RABEP2Q9H5N1 569 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 SPIN1Q9Y657 262 aaPredicted RBP13.27□□□□□ -0.29
SS18-212ENST00000579061 GMEB1Q9Y692 573 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 DSPPQ9NZW4 1301 aa13.27□□□□□ -0.29
SS18-212ENST00000579061 CLIC1O00299 241 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 EDF1O60869 148 aaKnown RBP13.26□□□□□ -0.29
SS18-212ENST00000579061 TFPTP0C1Z6 253 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 BMP2P12643 396 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 ETFAP13804 333 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 POU2F1P14859 743 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 IL7RP16871 459 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 HTR3AP46098 478 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 CLK1P49759 484 aaKnown RBP13.26□□□□□ -0.29
SS18-212ENST00000579061 PLAURQ03405 335 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 FAM27E3Q08E93 113 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 MERTKQ12866 999 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 SQLEQ14534 574 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 RGNQ15493 299 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 ZSWIM7Q19AV6 140 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 FREM1Q5H8C1 2179 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 PRAMEF8Q5VWM4 474 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 PRAMEF7Q5VXH5 474 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 SLC2A7Q6PXP3 512 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 FCRLAQ7L513 359 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 GRINAQ7Z429 371 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 ZNF440Q8IYI8 595 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 ZNF610Q8N9Z0 462 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 ZNF563Q8TA94 476 aa13.26□□□□□ -0.29
SS18-212ENST00000579061 CNOT9Q92600 299 aaKnown RBP13.26□□□□□ -0.29
SS18-212ENST00000579061 AURKBQ96GD4 344 aaPredicted RBP13.26□□□□□ -0.29
SS18-212ENST00000579061 TACO1Q9BSH4 297 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms