RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 NUDT14O95848 222 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 CCL3P10147 92 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 POU2F1P14859 743 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 CASRP41180 1078 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 CYB561P49447 251 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 ADARB1P78563 741 aaKnown RBP12.47□□□□□ -0.41
CCDC40-209ENST00000573474 CDC20Q12834 499 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 COX10Q12887 443 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 SLC36A3Q495N2 470 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 TTC23Q5W5X9 447 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 OR5M10Q6IEU7 315 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 TTC33Q6PID6 262 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-209ENST00000573474 CD300LDQ6UXZ3 194 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 WDR88Q6ZMY6 472 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 PRICKLE2Q7Z3G6 844 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 ATG4DQ86TL0 474 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-209ENST00000573474 NRMQ8IXM6 262 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 PARP8Q8N3A8 854 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF555Q8NEP9 628 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 SNIP1Q8TAD8 396 aaKnown RBP12.47□□□□□ -0.41
CCDC40-209ENST00000573474 NTNG2Q96CW9 530 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 ADAM19Q9H013 955 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 ING2Q9H160 280 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 FAM118AQ9NWS6 357 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 TAS2R10Q9NYW0 307 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 MED11Q9P086 117 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 LRCH1Q9Y2L9 728 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 CFAP54Q96N23 3096 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 A0A087WUJ7 227 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 ELOA3DA6NLF2 546 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 KLK10O43240 276 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 TLX3O43711 291 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 GMFGO60234 142 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 CDC40O60508 579 aaKnown RBP eCLIP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 SNX4O95219 450 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 NTN1O95631 604 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 P04436 131 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 GSTM3P21266 225 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 CD96P40200 585 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 HTR3AP46098 478 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 OMPP47874 163 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 LSM11P83369 360 aaKnown RBP eCLIP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 OC90Q02509 493 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 PRKCDQ05655 676 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 NPRL3Q12980 569 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 KCNAB2Q13303 367 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 MED21Q13503 144 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 QPRTQ15274 297 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 TOMM34Q15785 309 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 ELOA3BQ3SY89 546 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 PRAMEF20Q5VT98 475 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 AGAP7PQ5VUJ5 663 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 CDK20Q8IZL9 346 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 ELOA3Q8NG57 546 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 TMEM234Q8WY98 164 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 ST8SIA1Q92185 356 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 AGAP4Q96P64 663 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 KLHDC3Q9BQ90 382 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 UTP23Q9BRU9 249 aaKnown RBP12.46□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF426Q9BUY5 554 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 GABARAPL3Q9BY60 117 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 DSN1Q9H410 356 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 RIBC2Q9H4K1 309 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 SACM1LQ9NTJ5 587 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 ANKRD10Q9NXR5 420 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 TMEM5Q9Y2B1 443 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 MED31Q9Y3C7 131 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 PCDHGB6Q9Y5F9 930 aa12.46□□□□□ -0.41
CCDC40-209ENST00000573474 LOC100130705A0A1B0GUX0 176 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 HTR3EA5X5Y0 456 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 A6NL46 340 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 SLC16A6O15403 523 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 PIP5K1CO60331 668 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 OSMP13725 252 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 FPR3P25089 353 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 MST1P26927 711 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 TACR3P29371 465 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 GSSP48637 474 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 POLR2HP52434 150 aaKnown RBP12.45□□□□□ -0.42
CCDC40-209ENST00000573474 DLX5P56178 289 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 CTBP2P56545 445 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 ESRRGP62508 458 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 TSPAN31Q12999 210 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 TUBA3CQ13748 450 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 TUBA3EQ6PEY2 450 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 KLHL17Q6TDP4 642 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 ISLR2Q6UXK2 745 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 GRINAQ7Z429 371 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 MDGA2Q7Z553 956 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 PLCZ1Q86YW0 608 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 FADS6Q8N9I5 356 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 OR2M3Q8NG83 312 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 OR4K17Q8NGC6 315 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 ZNF524Q96C55 264 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 FAM122AQ96E09 287 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 TMEM41AQ96HV5 264 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 FAM46AQ96IP4 442 aaKnown RBP12.45□□□□□ -0.42
CCDC40-209ENST00000573474 ANKRD60Q9BZ19 345 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 SLC19A3Q9BZV2 496 aa12.45□□□□□ -0.42
CCDC40-209ENST00000573474 GRIP2Q9C0E4 1043 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms