RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 HEPHL1Q6MZM0 1159 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 ALKBH2Q6NS38 261 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 BHLHA15Q7RTS1 189 aaPredicted RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 TMCO5AQ8N6Q1 288 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 RFWD2Q8NHY2 731 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 MIPOL1Q8TD10 442 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 ZNF75CPQ92670 426 aaPredicted RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 ARL8AQ96BM9 186 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 ZNF350Q9GZX5 532 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 NOP53Q9NZM5 478 aaKnown RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 FBN3Q75N90 2809 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 CENPVL1A0A0U1RR11 272 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 INAFM1C9JVW0 142 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 RNASET2O00584 256 aaKnown RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 SCN2BO60939 215 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 UGT2B17O75795 530 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 THBS1P07996 1170 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 SOAT1P35610 550 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 CCR4P51679 360 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 SESN3P58005 492 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 VSNL1P62760 191 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 KRTAP1-1Q07627 177 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 IFFO1Q0D2I5 559 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 RASGEF1BQ0VAM2 473 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 TNK1Q13470 666 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 GPR68Q15743 365 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 ETFDHQ16134 617 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 ZNF672Q499Z4 452 aaPredicted RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 OR4F3Q6IEY1 312 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 C3orf33Q6P1S2 294 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 CLECL1Q8IZS7 167 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 OR8J2Q8NGG1 315 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 SMAP2Q8WU79 429 aaPredicted RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 OIT3Q8WWZ8 545 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 FBXW5Q969U6 566 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 THUMPD3Q9BV44 507 aaKnown RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 TMEM109Q9BVC6 243 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 QRSL1Q9H0R6 528 aaKnown RBP15.17■□□□□ 0.02
CLN3-216ENST00000565316 ACER3Q9NUN7 267 aa15.17■□□□□ 0.02
CLN3-216ENST00000565316 CADP27708 2225 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 SONP18583 2426 aaKnown RBP15.16■□□□□ 0.02
CLN3-216ENST00000565316 FBN1P35555 2871 aaKnown RBP15.16■□□□□ 0.02
CLN3-216ENST00000565316 MXRA5Q9NR99 2828 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 RNF103-CHMP3A0A140T963 221 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 DPRXA6NFQ7 191 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 KIAA1324LA8MWY0 1029 aaPredicted RBP15.16■□□□□ 0.02
CLN3-216ENST00000565316 CLOCKO15516 846 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 EDNRAP25101 427 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 BSPH1Q075Z2 132 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 TMPPEQ6ZT21 453 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 EIF3MQ7L2H7 374 aaKnown RBP15.16■□□□□ 0.02
CLN3-216ENST00000565316 SSX8Q7RTT4 187 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 ATG4DQ86TL0 474 aaPredicted RBP15.16■□□□□ 0.02
CLN3-216ENST00000565316 CLEC4FQ8N1N0 589 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 ZNF619Q8N2I2 560 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 FAM71CQ8NEG0 241 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 AENQ8WTP8 325 aaKnown RBP15.16■□□□□ 0.02
CLN3-216ENST00000565316 NEUROG1Q92886 237 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 SLC35G5Q96KT7 338 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 OR5B2Q96R09 309 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 TRIM2Q9C040 744 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 AKTIPQ9H8T0 292 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 PRSS50Q9UI38 385 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 MKLN1Q9UL63 735 aa15.16■□□□□ 0.02
CLN3-216ENST00000565316 IGKV3D-15A0A087WSY6 115 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 ITM2AO43736 263 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 KIAA0513O60268 411 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 CSTAP01040 98 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 PGCP20142 388 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 COX5AP20674 150 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 DIO1P49895 249 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 PHC1P78364 1004 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 PPP2R2BQ00005 443 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 MERTKQ12866 999 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 PDK3Q15120 406 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 MAPK14Q16539 360 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 ABLIM2Q6H8Q1 611 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 OLIG3Q7RTU3 272 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 GALNT5Q7Z7M9 940 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 NUDCD3Q8IVD9 361 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 SLC25A43Q8WUT9 341 aaPredicted RBP15.15■□□□□ 0.02
CLN3-216ENST00000565316 TMEM234Q8WY98 164 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 TRMT61AQ96FX7 289 aaKnown RBP15.15■□□□□ 0.02
CLN3-216ENST00000565316 ZNF300Q96RE9 604 aaPredicted RBP15.15■□□□□ 0.02
CLN3-216ENST00000565316 SAP130Q9H0E3 1048 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 OR51I1Q9H343 314 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 POLE3Q9NRF9 147 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 SERINC1Q9NRX5 453 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 EXD2Q9NVH0 621 aa15.15■□□□□ 0.02
CLN3-216ENST00000565316 MAGED1Q9Y5V3 778 aaPredicted RBP15.15■□□□□ 0.02
CLN3-216ENST00000565316 GOLGA8QA0A0J9YX86 632 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 PRSS51A0A1B0GVH4 220 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 GOLGA8OA6NCC3 632 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 C9JVG2 144 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 GOLGA8NF8WBI6 632 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 LYZL6O75951 148 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 PGM3O95394 542 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 AGR2O95994 175 aa15.14■□□□□ 0.01
CLN3-216ENST00000565316 UBTFL6P0CB48 400 aaPredicted RBP15.14■□□□□ 0.01
CLN3-216ENST00000565316 IDUAP35475 653 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms