RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 GCAP28676 217 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 OXTRP30559 389 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 UGT1A5P35504 534 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ACVR1BP36896 505 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RPL13AP40429 203 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 HLCSP50747 726 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RIDAP52758 137 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 BLVRAP53004 296 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 HSPA2P54652 639 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 LIM2P55344 173 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SLC8A3P57103 927 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 EIF3EP60228 445 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 RIPPLY1Q0D2K3 151 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ZNF154Q13106 437 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 DNAJC3Q13217 504 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 IL18R1Q13478 541 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 FASTKD3Q14CZ7 662 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 NDUFA9Q16795 377 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 FAM120AOSQ5T036 256 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 DCST2Q5T1A1 773 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ZNF57Q68EA5 555 aaPredicted RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 PVRIGQ6DKI7 326 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 KIAA1161Q6NSJ0 714 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RNASEKQ6P5S7 137 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 ERICH5Q6P6B1 374 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RFWD3Q6PCD5 774 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 PAQR6Q6TCH4 344 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 REG3GQ6UW15 175 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 PAQR7Q86WK9 346 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RNF130Q86XS8 419 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 CCDC50Q8IVM0 306 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 KLHDC8BQ8IXV7 354 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 OFCC1Q8IZS5 231 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 KIR3DL3Q8N743 410 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ATP6V0D2Q8N8Y2 350 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SDR9C7Q8NEX9 313 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SPATA4Q8NEY3 305 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 OR4D9Q8NGE8 314 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 FAM110BQ8TC76 370 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ACMSDQ8TDX5 336 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 TRUB1Q8WWH5 349 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 TAF15Q92804 592 aaKnown RBP eCLIP2.56□□□□□ -2
TRAV28-201ENST00000557548 OR5B2Q96R09 309 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 PANX1Q96RD7 426 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 LITAFQ99732 161 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SPATA16Q9BXB7 569 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 GLIPR2Q9H4G4 154 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ZNF696Q9H7X3 374 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 KLHL28Q9NXS3 571 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SLC2A8Q9NY64 477 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 NUDT4Q9NZJ9 180 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SLC7A8Q9UHI5 535 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SPATA2Q9UM82 520 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 PRPF19Q9UMS4 504 aaKnown RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 SCML2Q9UQR0 700 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 C15orf41Q9Y2V0 281 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 USP16Q9Y5T5 823 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RPAP1Q9BWH6 1393 aaPredicted RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 HMGXB3Q12766 1538 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SMARCA2P51531 1590 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 PPIAL4EA0A075B759 164 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 IGHV3OR16-12A0A075B7B8 117 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 FOXI3A8MTJ6 420 aaPredicted RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 F5H6K3 240 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 SPECC1L-ADORA2AF8WAN1 911 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 NR5A2O00482 541 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 GAKO14976 1311 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 PRKAB2O43741 272 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 IDH3BO43837 385 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 CTAG2O75638 210 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 ATP5LO75964 103 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 CLDN9O95484 217 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 POP4O95707 220 aaKnown RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 SEMA4FO95754 770 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 HPP00738 406 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 GAPDHP04406 335 aaKnown RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 ZNF853P0CG23 659 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 PPIAL4FP0DN26 164 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 UMPSP11172 480 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 GCFC2P16383 781 aaKnown RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 IDSP22304 550 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 ANOS1P23352 680 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 NMT1P30419 496 aaKnown RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 CASP14P31944 242 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 S100A5P33763 92 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 HMGCLP35914 325 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 FDFT1P37268 417 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 GSK3BP49841 420 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 DUSP3P51452 185 aaPredicted RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 RND3P61587 244 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 OGDHQ02218 1023 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 KLRC3Q07444 240 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 PUDPQ08623 228 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 BST2Q10589 180 aaKnown RBP2.55□□□□□ -2
TRAV28-201ENST00000557548 KLRB1Q12918 225 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 COTL1Q14019 142 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 IL18Q14116 193 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 CYP51A1Q16850 503 aa2.55□□□□□ -2
TRAV28-201ENST00000557548 CNPY1Q3B7I2 92 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms