RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 TRIM33Q9UPN9 1127 aa10.57□□□□□ -0.72
CKAP4-202ENST00000552828 VDAC3Q9Y277 283 aa10.57□□□□□ -0.72
CKAP4-202ENST00000552828 USF3Q68DE3 2245 aa10.57□□□□□ -0.72
CKAP4-202ENST00000552828 FAM234BA2RU67 622 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 CXCL13O43927 109 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 THBS1P07996 1170 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 UQCRC2P22695 453 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 LCN1P31025 176 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 RFX3P48380 749 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 ETFDHQ16134 617 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 PLPPR5Q32ZL2 321 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 HEPHL1Q6MZM0 1159 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 ESPNLQ6ZVH7 1005 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 C6orf120Q7Z4R8 191 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 STK32CQ86UX6 486 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 TRIML2Q8N7C3 387 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 SLC16A11Q8NCK7 471 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 OR5AK3PQ8NH89 298 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 LILRB1Q8NHL6 650 aaPredicted RBP10.56□□□□□ -0.72
CKAP4-202ENST00000552828 PIK3R3Q92569 461 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 AKAP1Q92667 903 aaKnown RBP eCLIP10.56□□□□□ -0.72
CKAP4-202ENST00000552828 CHMP6Q96FZ7 201 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 CCDC115Q96NT0 180 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 PANX1Q96RD7 426 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 STACQ99469 402 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 NPAS1Q99742 590 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 HDHD5Q9BXW7 423 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 ACTRT3Q9BYD9 372 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 RABEP2Q9H5N1 569 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 MED17Q9NVC6 651 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 GPATCH2Q9NW75 528 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 TMEM45AQ9NWC5 275 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 GIN1Q9NXP7 522 aa10.56□□□□□ -0.72
CKAP4-202ENST00000552828 A0A0J9YW62 118 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 RNF103-CHMP3A0A140T963 221 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 NDUFB5O43674 189 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 GCM2O75603 506 aaPredicted RBP10.55□□□□□ -0.72
CKAP4-202ENST00000552828 SYNGR4O95473 234 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 OXSR1O95747 527 aaPredicted RBP10.55□□□□□ -0.72
CKAP4-202ENST00000552828 DANCRP0C864 163 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 ACP2P11117 423 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 NCF2P19878 526 aaPredicted RBP10.55□□□□□ -0.72
CKAP4-202ENST00000552828 AGTR1P30556 359 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 ATP4BP51164 291 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 RPS4XP62701 263 aaKnown RBP10.55□□□□□ -0.72
CKAP4-202ENST00000552828 SQLEQ14534 574 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 DUSP5Q16690 384 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 EXOSC6Q5RKV6 272 aaKnown RBP10.55□□□□□ -0.72
CKAP4-202ENST00000552828 METTL21CQ5VZV1 264 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 GTF2IRD2BQ6EKJ0 949 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 CDC73Q6P1J9 531 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 DNAJC14Q6Y2X3 702 aaPredicted RBP10.55□□□□□ -0.72
CKAP4-202ENST00000552828 MSANTD1Q6ZTZ1 278 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 GTF2IRD2Q86UP8 949 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 WFDC8Q8IUA0 241 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 MISPQ8IVT2 679 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 GABRG1Q8N1C3 465 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 COX18Q8N8Q8 333 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 STEAP2Q8NFT2 490 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 OR9I1Q8NGQ6 314 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 FBXO30Q8TB52 745 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 POC1BQ8TC44 478 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 ADAMTS15Q8TE58 950 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 RNF145Q96MT1 663 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 BTBD2Q9BX70 525 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 FAM107BQ9H098 131 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 PIGUQ9H490 435 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 RMND5AQ9H871 391 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 GP6Q9HCN6 339 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 DUSP22Q9NRW4 184 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 LAMP3Q9UQV4 416 aa10.55□□□□□ -0.72
CKAP4-202ENST00000552828 A0A1W2PQD3 144 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 CCDC154A6NI56 674 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 DUXAA6NLW8 204 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 RFXANKO14593 260 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 TNFSF11O14788 317 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 GMFGO60234 142 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 KCNK2O95069 426 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 OPN1LWP04000 364 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 SOD3P08294 240 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 LINGO3P0C6S8 592 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 PABPC4LP0CB38 370 aaKnown RBP10.54□□□□□ -0.72
CKAP4-202ENST00000552828 MATN1P21941 496 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 ME2P23368 584 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 CHI3L1P36222 383 aaPredicted RBP10.54□□□□□ -0.72
CKAP4-202ENST00000552828 EIF1P41567 113 aaKnown RBP10.54□□□□□ -0.72
CKAP4-202ENST00000552828 ARFIP2P53365 341 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 CARD18P57730 90 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 POU6F2P78424 691 aaPredicted RBP10.54□□□□□ -0.72
CKAP4-202ENST00000552828 CLEC12BQ2HXU8 276 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 TIGD2Q4W5G0 525 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 NCMAPQ5T1S8 102 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 PDSS1Q5T2R2 415 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 HBMQ6B0K9 141 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 PPP4R4Q6NUP7 873 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 BLOC1S3Q6QNY0 202 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 DNM1P46Q6ZS02 220 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 ZNF621Q6ZSS3 439 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 CLEC4FQ8N1N0 589 aa10.54□□□□□ -0.72
CKAP4-202ENST00000552828 RNF128Q8TEB7 428 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms