RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 EMDP50402 254 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 NAPAP54920 295 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 TCP10Q12799 353 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 TCEAL5Q5H9L2 206 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 TCTEX1D4Q5JR98 221 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 CBLN3Q6UW01 205 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 CENPUQ71F23 418 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 UBALD2Q8IYN6 164 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 FADS6Q8N9I5 356 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 OR5AU1Q8NGC0 362 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 RFESDQ8TAC1 157 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 ZNF671Q8TAW3 534 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 SYAP1Q96A49 352 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-205ENST00000550592 ZBED6CLQ96FA7 236 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-205ENST00000550592 FOXN4Q96NZ1 517 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 VPS35Q96QK1 796 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 COMMD4Q9H0A8 199 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 PNNQ9H307 717 aaKnown RBP3.78□□□□□ -1.8
LIMA1-205ENST00000550592 WDR76Q9H967 626 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 GPN2Q9H9Y4 310 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-205ENST00000550592 C1orf123Q9NWV4 160 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 BLOC1S6Q9UL45 172 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 BARX2Q9UMQ3 279 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-205ENST00000550592 B9D1Q9UPM9 204 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 AP4B1Q9Y6B7 739 aa3.78□□□□□ -1.8
LIMA1-205ENST00000550592 TEP1Q99973 2627 aaKnown RBP3.78□□□□□ -1.8
LIMA1-205ENST00000550592 PTPRFP10586 1907 aa3.78□□□□□ -1.81
LIMA1-205ENST00000550592 RFX7Q2KHR2 1363 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 TRAV9-2A0A087WT02 112 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 PPIHO43447 177 aaKnown RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 GPRIN2O60269 458 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 LCMT2O60294 686 aaKnown RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 ZNF253O75346 499 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 PRAMEF12O95522 483 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 CHRNA1P02708 482 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 PCCAP05165 728 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 HMGCLP35914 325 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 UBE2V2Q15819 145 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 LINC01620Q4KN68 170 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 APOBEC3HQ6NTF7 200 aaKnown RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 STAC2Q6ZMT1 411 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 DEFB128Q7Z7B8 93 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 ERICH1Q86X53 443 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 CENPLQ8N0S6 344 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 STKLD1Q8NE28 680 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 HPDLQ96IR7 371 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 MCCC1Q96RQ3 725 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 FEM1AQ9BSK4 669 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 ZNF416Q9BWM5 594 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 MEPEQ9NQ76 525 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-205ENST00000550592 GALPQ9UBC7 116 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 RALGAPA2Q2PPJ7 1873 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 MYO10Q9HD67 2058 aa3.77□□□□□ -1.81
LIMA1-205ENST00000550592 TRIM49BA6NDI0 452 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 SAP18O00422 153 aaKnown RBP3.76□□□□□ -1.81
LIMA1-205ENST00000550592 ANGPT2O15123 496 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 JCHAINP01591 159 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 KRT8P05787 483 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 OR1D4P47884 311 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 ARHGDIBP52566 201 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 C15orf32Q32M92 178 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 N4BP2L1Q5TBK1 243 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-205ENST00000550592 LGSNQ5TDP6 509 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 ASPHD2Q6ICH7 369 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 MARCH9Q86YJ5 346 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 AGAP11Q8TF27 550 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 TFB1MQ8WVM0 346 aaKnown RBP3.76□□□□□ -1.81
LIMA1-205ENST00000550592 TADA1Q96BN2 335 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 UPRTQ96BW1 309 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 DTNBP1Q96EV8 351 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 CASD1Q96PB1 797 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 APOL2Q9BQE5 337 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 HCAR1Q9BXC0 346 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 SLC25A51Q9H1U9 297 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 TIGARQ9NQ88 270 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 RBM28Q9NW13 759 aaKnown RBP3.76□□□□□ -1.81
LIMA1-205ENST00000550592 PRODH2Q9UF12 536 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 LAMP5Q9UJQ1 280 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 DUSP12Q9UNI6 340 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 ABCA12Q86UK0 2595 aa3.76□□□□□ -1.81
LIMA1-205ENST00000550592 KIF16BQ96L93 1317 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 VPS13AQ96RL7 3174 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 ZSCAN5CA6NGD5 496 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 CASKO14936 926 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 MAPK13O15264 365 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 JAK2O60674 1132 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 ZNF354AO60765 605 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 IDH1O75874 414 aaKnown RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 MFN2O95140 757 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 GJB5O95377 273 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 ASGR1P07306 291 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 IGFBP1P08833 259 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 CT45A10P0DMU9 189 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 HSPA5P11021 654 aaKnown RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 H2AFXP16104 143 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 SDC1P18827 310 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 XRCC1P18887 633 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-205ENST00000550592 PRKAR2BP31323 418 aa3.75□□□□□ -1.81
LIMA1-205ENST00000550592 KIF5BP33176 963 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms