RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 MCCC2Q9HCC0 563 aa17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 BABAM2Q9NXR7 383 aa17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 LRIT1Q9P2V4 623 aa17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 ERVK-19Q9WJR5 959 aa17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 SLC35A3Q9Y2D2 325 aa17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 CACNA1IQ9P0X4 2223 aa17.07■□□□□ 0.32
PRPF40B-208ENST00000548436 A0A1W2PQ09 198 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 RNF13O43567 381 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 MRPL3P09001 348 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 IMPDH2P12268 514 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 NME1P15531 152 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 SLC2A5P22732 501 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 MAOBP27338 520 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 RBM34P42696 430 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 RFX2P48378 723 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 PGDP52209 483 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 SLC16A1P53985 500 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 GFERP55789 205 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 RPS7P62081 194 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 SKP1P63208 163 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 XKRXQ6PP77 449 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 KIRREL2Q6UWL6 708 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 ZNF687Q8N1G0 1237 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 CADM2Q8N3J6 435 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 NLGN4YQ8NFZ3 816 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 OR10H4Q8NGA5 316 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 OR6C4Q8NGE1 309 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 OR4C6Q8NH72 309 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 C16orf52Q8NHV5 167 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 MMABQ96EY8 250 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 ZNF285Q96NJ3 590 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 SLC38A3Q99624 504 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 COMMD3Q9UBI1 195 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 PCDHGB2Q9Y5G2 931 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 MPDZO75970 2070 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 A0A1W2PR77 199 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 DAPL1A0PJW8 107 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 SLC22A31A6NKX4 558 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 CHURC1-FNTBB4DL54 471 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 CLDN4O14493 209 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 GNB5O14775 395 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 PRAMEF2O60811 474 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 IGFBP4P22692 258 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 BDH1Q02338 343 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 CRYZQ08257 329 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 MADCAM1Q13477 382 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 GALEQ14376 348 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 ARMC4Q5T2S8 1044 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 EGFL6Q8IUX8 553 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 FAM174AQ8TBP5 190 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 SMAP2Q8WU79 429 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 ATF6BQ99941 703 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 OR10A5Q9H207 317 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 Q9N2J8 555 aa17.06■□□□□ 0.32
PRPF40B-208ENST00000548436 LAMA1P25391 3075 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 IGHV5-51A0A0C4DH38 117 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 RIIAD1A6NNX1 92 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 GTPBP1O00178 669 aaKnown RBP17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 CSF3P09919 207 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 ATXN8OSP0DMR3 200 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 SRFP11831 508 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 CD38P28907 300 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 FNTBP49356 437 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 ATP12AP54707 1039 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 TAB1Q15750 504 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 RTL4Q6ZR62 310 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 AKAP14Q86UN6 197 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 BCORP1Q8N888 145 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 OR4C3Q8NH37 302 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 TGM7Q96PF1 710 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 ADGRL4Q9HBW9 690 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 WDR70Q9NW82 654 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 POLHQ9Y253 713 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 LINC00854A0A1B0GVQ3 168 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 A0A1W2PPC1 479 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 BLACEA4D250 179 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 POLR1CO15160 346 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 MBTPS2O43462 519 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 HYAL3O43820 417 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 ZNF217O75362 1048 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 GYPBP06028 91 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 PEPDP12955 493 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 MLLT3P42568 568 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 CASP3P42574 277 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 FUT7Q11130 342 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 GPR50Q13585 617 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 ULK3Q6PHR2 472 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 ZNF550Q7Z398 422 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 GKN2Q86XP6 184 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 OR51Q1Q8NH59 317 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 G6PC3Q9BUM1 346 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 SPRTNQ9H040 489 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 UCK1Q9HA47 277 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 SLC2A4RGQ9NR83 387 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 PLCL2Q9UPR0 1127 aa17.05■□□□□ 0.32
PRPF40B-208ENST00000548436 LILRA5A6NI73 299 aa17.04■□□□□ 0.32
PRPF40B-208ENST00000548436 E9PI62 339 aa17.04■□□□□ 0.32
PRPF40B-208ENST00000548436 PRKNO60260 465 aaPredicted RBP17.04■□□□□ 0.32
PRPF40B-208ENST00000548436 HPGDSO60760 199 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms