RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CSF3P09919 207 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 GGT1P19440 569 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 SERPINB4P48594 390 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 EFNA4P52798 201 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 RAC3P60763 192 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 TOMM34Q15785 309 aaPredicted RBP11.29□□□□□ -0.6
USP28-212ENST00000544750 DUSP5Q16690 384 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 FAM166AQ6J272 317 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 CBLN3Q6UW01 205 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 FBXL14Q8N1E6 418 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 CDC26Q8NHZ8 85 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 EGLN2Q96KS0 407 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 FCRL1Q96LA6 429 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 ZNF300Q96RE9 604 aaPredicted RBP11.29□□□□□ -0.6
USP28-212ENST00000544750 PRR14Q9BWN1 585 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 KLHL9Q9P2J3 617 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 KCNS2Q9ULS6 477 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 ICAM5Q9UMF0 924 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 FIS1Q9Y3D6 152 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 SLC25A15Q9Y619 301 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 ZNF724A8MTY0 619 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 ETV2O00321 342 aaPredicted RBP11.28□□□□□ -0.6
USP28-212ENST00000544750 SMAD9O15198 467 aaKnown RBP11.28□□□□□ -0.6
USP28-212ENST00000544750 TM9SF1O15321 606 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 ERLIN1O75477 346 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 CRCPO75575 148 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 LY6HO94772 140 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 PTAFRP25105 342 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 CD40P25942 277 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 FRKP42685 505 aaPredicted RBP11.28□□□□□ -0.6
USP28-212ENST00000544750 HSPB3Q12988 150 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 VPS26BQ4G0F5 336 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 SPDYAQ5MJ70 313 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 ZNF544Q6NX49 715 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 TMEM108Q6UXF1 575 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 IKBIPQ70UQ0 350 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 NUP43Q8NFH3 380 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 CEP70Q8NHQ1 597 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 FAM76AQ8TAV0 307 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 GPR119Q8TDV5 335 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 TWIST2Q8WVJ9 160 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 ZNF764Q96H86 408 aaPredicted RBP11.28□□□□□ -0.6
USP28-212ENST00000544750 CENPHQ9H3R5 247 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 CHODLQ9H9P2 273 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 ZDHHC2Q9UIJ5 367 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 TRAF6Q9Y4K3 522 aa11.28□□□□□ -0.6
USP28-212ENST00000544750 POLR3HQ9Y535 204 aaPredicted RBP11.28□□□□□ -0.6
USP28-212ENST00000544750 GPC6Q9Y625 555 aaPredicted RBP11.28□□□□□ -0.6
USP28-212ENST00000544750 LOC100289279A0A1B0GTE1 492 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 A0A1W2PNR3 127 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 GJE1A6NN92 205 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 C9JVG2 144 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 SCDO00767 359 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 LSM1O15116 133 aaKnown RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 ITM2AO43736 263 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 LYPLA1O75608 230 aaPredicted RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 LINC00032P0C843 101 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 PRKCAP17252 672 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 SERPINB5P36952 375 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 FABP6P51161 128 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 P2RX1P51575 399 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 RASGEF1BQ0VAM2 473 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 SQLEQ14534 574 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 IMPG1Q17R60 797 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 ZNF385BQ569K4 471 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 XKR7Q5GH72 579 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 SLC25A53Q5H9E4 307 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 CCNJQ5T5M9 372 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 LIPNQ5VXI9 398 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 NOXRED1Q6NXP6 359 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 SLC22A25Q6T423 547 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 MTERF4Q7Z6M4 381 aaKnown RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 CROCCP2Q86T23 111 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 MEX3DQ86XN8 651 aaKnown RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 FBXO30Q8TB52 745 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 AGR3Q8TD06 166 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 CIDECQ96AQ7 238 aaPredicted RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 ZNF775Q96BV0 537 aaPredicted RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 TLCD1Q96CP7 247 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 C16orf58Q96GQ5 468 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 C1orf159Q96HA4 380 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 METTL2AQ96IZ6 378 aaKnown RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 INPP5KQ9BT40 448 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 PLA2G12AQ9BZM1 189 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 C20orf27Q9GZN8 174 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 TMBIM4Q9HC24 238 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 EML4Q9HC35 981 aaKnown RBP11.27□□□□□ -0.61
USP28-212ENST00000544750 MEGF8Q7Z7M0 2845 aa11.27□□□□□ -0.61
USP28-212ENST00000544750 IGHV4-61A0A0C4DH41 118 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 WDR91A4D1P6 747 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 SLC28A1O00337 649 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 PIP5K1BO14986 540 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 BIRC5O15392 142 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 PDPK1O15530 556 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 TBX19O60806 448 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 RAD51DO75771 328 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 HSPA4LO95757 839 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 NEFHP12036 1026 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 HPGDP15428 266 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 NR4A2P43354 598 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms