RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 HCAR1Q9BXC0 346 aa12.71□□□□□ -0.37
VPS33A-208ENST00000543633 CLEC4MQ9H2X3 399 aaPredicted RBP12.71□□□□□ -0.37
VPS33A-208ENST00000543633 C19orf53Q9UNZ5 99 aaPredicted RBP12.71□□□□□ -0.37
VPS33A-208ENST00000543633 MED31Q9Y3C7 131 aa12.71□□□□□ -0.37
VPS33A-208ENST00000543633 MRPS23Q9Y3D9 190 aaKnown RBP12.71□□□□□ -0.37
VPS33A-208ENST00000543633 A0A087WV62 115 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 NAP1L6A6NFF2 107 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 ZSCAN5BA6NJL1 495 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 E9PI62 339 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 GPR171O14626 319 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 UCHL1P09936 223 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 NT5EP21589 574 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 RPS7P62081 194 aaKnown RBP12.71□□□□□ -0.38
VPS33A-208ENST00000543633 BTN3A2P78410 334 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 GGTLC2Q14390 218 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 SLC25A35Q3KQZ1 300 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 C9orf50Q5SZB4 431 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 FAM27D1Q5T7N8 215 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 AGBL4Q5VU57 503 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 WDR88Q6ZMY6 472 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 USP53Q70EK8 1073 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 SLITRK4Q8IW52 837 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 POMGNT2Q8NAT1 580 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 C17orf47Q8NEP4 570 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 PFN4Q8NHR9 129 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 RPLP0P6Q8NHW5 317 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 SMPDL3BQ92485 455 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 NXPE2Q96DL1 559 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 BPIFA2Q96DR5 249 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 MRPL48Q96GC5 212 aaKnown RBP12.71□□□□□ -0.38
VPS33A-208ENST00000543633 SERINC2Q96SA4 455 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 MACROD1Q9BQ69 325 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF559Q9BR84 538 aa12.71□□□□□ -0.38
VPS33A-208ENST00000543633 THAP10Q9P2Z0 257 aaPredicted RBP12.71□□□□□ -0.38
VPS33A-208ENST00000543633 TRPM6Q9BX84 2022 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 LOC105371267A0A1B0GV96 52 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 ZC3H12DA2A288 527 aaKnown RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 C5orf67F2Z3F1 127 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 J3QLW9 94 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 TSC22D2O75157 780 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 STATHP02808 62 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 EPXP11678 715 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 LAMP2P13473 410 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 PRG2P13727 222 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 HOXB3P14651 431 aaPredicted RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 MYOGP15173 224 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF19P17023 458 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 C4BPBP20851 252 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 GIFP27352 417 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 TLX1P31314 330 aaPredicted RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 CTNNB1P35222 781 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 RBM34P42696 430 aaKnown RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 TJAP1Q5JTD0 557 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 UBE2NLQ5JXB2 153 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 WDR45BQ5MNZ6 344 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 ELFN2Q5R3F8 820 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 MRPL2Q5T653 305 aaKnown RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 FAM109BQ6ICB4 259 aaPredicted RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 OR4C6Q8NH72 309 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 SPPL3Q8TCT6 385 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 RSPRY1Q96DX4 576 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 SMIM19Q96E16 107 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 LCORQ96JN0 433 aaPredicted RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 MBNL1Q9NR56 388 aaKnown RBP12.7□□□□□ -0.38
VPS33A-208ENST00000543633 DLL4Q9NR61 685 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 KLHL1Q9NR64 748 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 OR6C2Q9NZP2 312 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 SLC17A4Q9Y2C5 497 aa12.7□□□□□ -0.38
VPS33A-208ENST00000543633 RPS10-NUDT3A0A1W2PQS6 291 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 OR5K3A6NET4 321 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF593O00488 134 aaPredicted RBP12.69□□□□□ -0.38
VPS33A-208ENST00000543633 PTP4A3O75365 173 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 REM1O75628 298 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 TGM6O95932 706 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 PDGFAP04085 211 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 ATF1P18846 271 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 POU3F3P20264 500 aaPredicted RBP12.69□□□□□ -0.38
VPS33A-208ENST00000543633 DNASE1P24855 282 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 SLC6A6P31641 620 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 SRP9P49458 86 aaKnown RBP12.69□□□□□ -0.38
VPS33A-208ENST00000543633 DGCR2P98153 550 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 SNTA1Q13424 505 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 CAMK2DQ13557 499 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 CAMK1Q14012 370 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 SUZ12Q15022 739 aaKnown RBP12.69□□□□□ -0.38
VPS33A-208ENST00000543633 CDK5R1Q15078 307 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 DCST2Q5T1A1 773 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 FHL5Q5TD97 284 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 FAAH2Q6GMR7 532 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 SEZ6L2Q6UXD5 910 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 THSD4Q6ZMP0 1018 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 VN1R4Q7Z5H5 301 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 TIGD4Q8IY51 512 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 CDRT4Q8N9R6 151 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 FAM71CQ8NEG0 241 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 OR11H4Q8NGC9 324 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 GIMAP1Q8WWP7 306 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 GHSRQ92847 366 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 MRI1Q9BV20 369 aa12.69□□□□□ -0.38
VPS33A-208ENST00000543633 MTIF3Q9H2K0 278 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms