RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 CD84Q9UIB8 345 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 HES2Q9Y543 173 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CSNK1G3Q9Y6M4 447 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 TRBV23-1A0A0A0MS06 115 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 TRAV34A0A0B4J273 112 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 NDUFS8O00217 210 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 SLC31A2O15432 143 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 KCNJ3P48549 501 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 NDUFV1P49821 464 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CDK5Q00535 292 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 BDH1Q02338 343 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 ACSM1Q08AH1 577 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 RIN1Q13671 783 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 ZNF266Q14584 549 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 ARL6IP1Q15041 203 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 LYPD8Q6UX82 237 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 MAML2Q8IZL2 1156 aaPredicted RBP8.24□□□□□ -1.09
YBX3-208ENST00000540447 LSMEM2Q8N112 164 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 FAM24BQ8N5W8 94 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 SFXN5Q8TD22 340 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 OR5P2Q8WZ92 322 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 UPRTQ96BW1 309 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 SRA1Q9HD15 236 aaKnown RBP8.24□□□□□ -1.09
YBX3-208ENST00000540447 SIRT7Q9NRC8 400 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 MED9Q9NWA0 146 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 IL20RAQ9UHF4 553 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 FBXO10Q9UK96 956 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 TAAR5O14804 337 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 GPR137BO60478 399 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CNMDO75829 334 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 KCNE1P15382 129 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 DPEP1P16444 411 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 F2RL1P55085 397 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CARD18P57730 90 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 VEZF1Q14119 521 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 ZNF124Q15973 351 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 NXNL2Q5VZ03 156 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 SHEQ5VZ18 495 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CD300LGQ6UXG3 332 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 TAC4Q86UU9 113 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 MFSD9Q8NBP5 474 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 YIPF6Q96EC8 236 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 SAMD8Q96LT4 415 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 NOL4LQ96MY1 436 aaPredicted RBP8.24□□□□□ -1.09
YBX3-208ENST00000540447 UHRF2Q96PU4 802 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 C20orf27Q9GZN8 174 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 RBM38Q9H0Z9 239 aaKnown RBP8.24□□□□□ -1.09
YBX3-208ENST00000540447 POFUT1Q9H488 388 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 LMAN1LQ9HAT1 526 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 SLC39A9Q9NUM3 307 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 C1orf123Q9NWV4 160 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CROCCQ5TZA2 2017 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 A0A1W2PQH9 124 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 FAM155AB1AL88 458 aaPredicted RBP8.24□□□□□ -1.09
YBX3-208ENST00000540447 B3GALT2O43825 422 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 VNN1O95497 513 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 JMJD7P0C870 316 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 CPZQ66K79 652 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 OPN5Q6U736 354 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 OR9K2Q8NGE7 335 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 HCAR2Q8TDS4 363 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 GPR148Q8TDV2 347 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 NINJ1Q92982 152 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 PTP4A1Q93096 173 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 EVA1AQ9H8M9 152 aa8.24□□□□□ -1.09
YBX3-208ENST00000540447 XRCC3O43542 346 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 CELF2O95319 508 aaKnown RBP8.23□□□□□ -1.09
YBX3-208ENST00000540447 PGCP20142 388 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 SHC1P29353 583 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 RAD52P43351 418 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 GPR50Q13585 617 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 ARHGAP19Q14CB8 494 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 PAFAH1B3Q15102 231 aaKnown RBP8.23□□□□□ -1.09
YBX3-208ENST00000540447 TESK1Q15569 626 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 IRAK1BP1Q5VVH5 260 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 LARP4Q71RC2 724 aaKnown RBP eCLIP8.23□□□□□ -1.094e-6■■□□□ 12.8
YBX3-208ENST00000540447 LRRTM1Q86UE6 522 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 CLECL1Q8IZS7 167 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 RDH10Q8IZV5 341 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 CLEC4CQ8WTT0 213 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 ST6GAL2Q96JF0 529 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 HRASLS5Q96KN8 279 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 FAM124BQ9H5Z6 455 aaPredicted RBP8.23□□□□□ -1.09
YBX3-208ENST00000540447 RNF24Q9Y225 148 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 CSAG2Q9Y5P2 127 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 UBIAD1Q9Y5Z9 338 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 ANHXE9PGG2 379 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 G3V3Q6 166 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 ZNF623O75123 536 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 EGFP01133 1207 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 ATP1B1P05026 303 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 SLC35A2P78381 396 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 SCAPQ12770 1279 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 ELAVL2Q12926 359 aaKnown RBP8.23□□□□□ -1.09
YBX3-208ENST00000540447 SMAD4Q13485 552 aaKnown RBP8.23□□□□□ -1.09
YBX3-208ENST00000540447 C3orf38Q5JPI3 329 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 C9orf57Q5W0N0 161 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 STEAP1BQ6NZ63 245 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 BAP18Q8IXM2 172 aa8.23□□□□□ -1.09
YBX3-208ENST00000540447 REM2Q8IYK8 340 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms