RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 BLOC1S5-TXNDC5H3BN57 136 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 KHNYNO15037 678 aaKnown RBP15.61■□□□□ 0.09
USP28-208ENST00000540438 WISP1O95388 367 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 KIRREL2Q6UWL6 708 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 MCATQ8IVS2 390 aaKnown RBP15.61■□□□□ 0.09
USP28-208ENST00000540438 Q8N402 240 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 ZNF524Q96C55 264 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 ZNF649Q9BS31 505 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 CPNE5Q9HCH3 593 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 PNO1Q9NRX1 252 aaKnown RBP15.61■□□□□ 0.09
USP28-208ENST00000540438 GSTK1Q9Y2Q3 226 aa15.61■□□□□ 0.09
USP28-208ENST00000540438 ASPMQ8IZT6 3477 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 A0A0G2JMP0 313 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 A0A0X1KG70 313 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 PRR23D1E9PI22 279 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 APBB3O95704 486 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 PRR23D2P0DMB1 279 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 BMP8BP34820 402 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 STAT5AP42229 794 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 ZNF57Q68EA5 555 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 QSOX2Q6ZRP7 698 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 BMP8AQ7Z5Y6 402 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 OR4M2Q8NGB6 313 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 NT5CQ8TCD5 201 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 ELF4Q99607 663 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 ORAI3Q9BRQ5 295 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 SPRTNQ9H040 489 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 RNF32Q9H0A6 362 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 BEX1Q9HBH7 125 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 RANGRFQ9HD47 186 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 MED31Q9Y3C7 131 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 IER3IP1Q9Y5U9 82 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 SPACA6W5XKT8 324 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 A0A0J9YY10 115 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 LANCL1O43813 399 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 OR5F1O95221 314 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 GPANK1O95872 356 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 PTTG1O95997 202 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 SRP9P49458 86 aaKnown RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 CEBPEQ15744 281 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 TBRG1Q3YBR2 411 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 ZNF655Q8N720 491 aaPredicted RBP15.6■□□□□ 0.09
USP28-208ENST00000540438 OR5M3Q8NGP4 307 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 RASD2Q96D21 266 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 GAL3ST4Q96RP7 486 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 NMNAT3Q96T66 252 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 TEAD3Q99594 435 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 TIMP4Q99727 224 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 SARGQ9BW04 601 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 PCNX3Q9H6A9 2034 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 ISPDA4D126 451 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 PLA2G10O15496 165 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 OIP5O43482 229 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 KIR2DL3P43628 341 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 SLC25A35Q3KQZ1 300 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 NIPAL3Q6P499 406 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 TUBA3EQ6PEY2 450 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 NPSR1Q6W5P4 371 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 ACBD7Q8N6N7 88 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 CDRT4Q8N9R6 151 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 PDCD1LG2Q9BQ51 273 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 LRRC61Q9BV99 259 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 NEK6Q9HC98 313 aa15.6■□□□□ 0.09
USP28-208ENST00000540438 NCOR1O75376 2440 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 SNTNA6NMZ2 147 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 MCIDASD6RGH6 385 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 KLF4O43474 513 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 HIST1H1CP16403 213 aaKnown RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 ERVK-25P63136 954 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.59■□□□□ 0.09
USP28-208ENST00000540438 EOGTQ5NDL2 527 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 CBLN3Q6UW01 205 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 OR4C6Q8NH72 309 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 RFKQ969G6 155 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 OR8D2Q9GZM6 311 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 HDHD2Q9H0R4 259 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 TMEM27Q9HBJ8 222 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 FGF20Q9NP95 211 aaPredicted RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 MRPL15Q9P015 296 aaKnown RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 ING1Q9UK53 422 aaPredicted RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 A0A0B4J293 547 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 MEIOCA2RUB1 952 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 SHISA7A6NL88 538 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 DBIP07108 87 aaKnown RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 GABRA5P31644 462 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 RAB15P59190 212 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 TPBGQ13641 420 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 ZNF362Q5T0B9 420 aaPredicted RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 ATAD3CQ5T2N8 411 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 C16orf47Q6ZP98 133 aaPredicted RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 CEACAM19Q7Z692 300 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 RBM12BQ8IXT5 1001 aaKnown RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 CDK20Q8IZL9 346 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 ZNF764Q96H86 408 aaPredicted RBP15.59■□□□□ 0.09
USP28-208ENST00000540438 SIGLEC7Q9Y286 467 aa15.59■□□□□ 0.09
USP28-208ENST00000540438 OR5K3A6NET4 321 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 STK25O00506 426 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 BHLHE40O14503 412 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 RPP14O95059 124 aaKnown RBP15.58■□□□□ 0.09
USP28-208ENST00000540438 F13BP05160 661 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms