RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 STX1BP61266 288 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 KCNJ10P78508 379 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 ZNF239Q16600 458 aaKnown RBP13.23□□□□□ -0.29
USP28-204ENST00000537642 C6orf10Q5SRN2 563 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 SLC2A7Q6PXP3 512 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 FUNDC1Q8IVP5 155 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 ROBO4Q8WZ75 1007 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 ST8SIA1Q92185 356 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 GTF2H4Q92759 462 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 AURKBQ96GD4 344 aaPredicted RBP13.23□□□□□ -0.29
USP28-204ENST00000537642 GMPPAQ96IJ6 420 aaPredicted RBP13.23□□□□□ -0.29
USP28-204ENST00000537642 MAGEB18Q96M61 343 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 DACH2Q96NX9 599 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 POLDIP3Q9BY77 421 aaKnown RBP13.23□□□□□ -0.29
USP28-204ENST00000537642 TPT1P8Q9HAU6 139 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 ACER3Q9NUN7 267 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 ITGB1BP2Q9UKP3 347 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 PROCRQ9UNN8 238 aa13.23□□□□□ -0.29
USP28-204ENST00000537642 HRNRQ86YZ3 2850 aaPredicted RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 A0A1W2PNR3 127 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 SH3D21A4FU49 640 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 AGAP5A6NIR3 686 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 GJE1A6NN92 205 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 ADAM11O75078 769 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 PLGP00747 810 aaPredicted RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 HOXB9P17482 250 aaPredicted RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 RPS4Y1P22090 263 aaKnown RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 CCKARP32238 428 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 CD79BP40259 229 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 PLEKHM3Q6ZWE6 761 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 OR6K3Q8NGY3 331 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 RNF128Q8TEB7 428 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 TMEM234Q8WY98 164 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 CNOT9Q92600 299 aaKnown RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 CPNE4Q96A23 557 aaPredicted RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 PAIP1Q9H074 479 aaKnown RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 CLEC4MQ9H2X3 399 aaPredicted RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 MTHFD2LQ9H903 347 aaPredicted RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 EXOSC3Q9NQT5 275 aaKnown RBP13.22□□□□□ -0.29
USP28-204ENST00000537642 PLSCR4Q9NRQ2 329 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 GLRX2Q9NS18 164 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 EMC9Q9Y3B6 208 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 PCDHB14Q9Y5E9 798 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 FREM1Q5H8C1 2179 aa13.22□□□□□ -0.29
USP28-204ENST00000537642 POU2F1P14859 743 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 SLC7A1P30825 629 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 DNAJA1P31689 397 aaKnown RBP13.21□□□□□ -0.29
USP28-204ENST00000537642 RYKP34925 604 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 CRATP43155 626 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 CTBP2P56545 445 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 DSTNP60981 165 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 MERTKQ12866 999 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 C3orf33Q6P1S2 294 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 BLOC1S3Q6QNY0 202 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 CDC20BQ86Y33 519 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 ARFGAP2Q8N6H7 521 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 ABHD3Q8WU67 409 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 SLC52A3Q9NQ40 469 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 TIGARQ9NQ88 270 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 ELOVL5Q9NYP7 299 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 P2RX2Q9UBL9 471 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 TESMINQ9Y4I5 508 aa13.21□□□□□ -0.29
USP28-204ENST00000537642 DSPPQ9NZW4 1301 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 NR5A2O00482 541 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 AP3D1O14617 1153 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 TFPTP0C1Z6 253 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 CD1EP15812 388 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 ENPP1P22413 925 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 AGTR1P30556 359 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 UGT2B10P36537 528 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 KCNJ5P48544 419 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 ATP4BP51164 291 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 MRPL2Q5T653 305 aaKnown RBP13.2□□□□□ -0.3
USP28-204ENST00000537642 GTF2IRD2BQ6EKJ0 949 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 FCRLAQ7L513 359 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 GTF2IRD2Q86UP8 949 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 CMIPQ8IY22 773 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 ZNF563Q8TA94 476 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 SLC38A5Q8WUX1 472 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 WDR60Q8WVS4 1066 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 PMM1Q92871 262 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 SPDL1Q96EA4 605 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 THOC1Q96FV9 657 aaKnown RBP13.2□□□□□ -0.3
USP28-204ENST00000537642 REXO5Q96IC2 774 aaKnown RBP13.2□□□□□ -0.3
USP28-204ENST00000537642 WFIKKN1Q96NZ8 548 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 OR5B2Q96R09 309 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 SLC39A3Q9BRY0 314 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 CCDC106Q9BWC9 280 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 LIME1Q9H400 295 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 CTPS2Q9NRF8 586 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 SERINC1Q9NRX5 453 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 CCDC167Q9P0B6 97 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 NDRG3Q9UGV2 375 aa13.2□□□□□ -0.3
USP28-204ENST00000537642 A0A096LPI6 279 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 IGHV3-15A0A0B4J1V0 119 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 C16orf97H3BN30 126 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 CLIC1O00299 241 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 GOSR1O95249 250 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 HRGP04196 525 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 BCHEP06276 602 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms