RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	MRGBP	Q9NV56	204 aa		10.31	□□□□□ -0.76
CTNND1-238	ENST00000534647	DDX18	Q9NVP1	670 aa	Known RBP	10.31	□□□□□ -0.76
CTNND1-238	ENST00000534647	NTM	Q9P121	344 aa		10.31	□□□□□ -0.76
CTNND1-238	ENST00000534647	MCTS1	Q9ULC4	181 aa	Known RBP	10.31	□□□□□ -0.76
CTNND1-238	ENST00000534647	STAB1	Q9NY15	2570 aa		10.31	□□□□□ -0.76
CTNND1-238	ENST00000534647	TMEM233	B4DJY2	109 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647		E9PBE3	544 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	NPIPB8	E9PQR5	432 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	NKX2-2	O95096	273 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	PLG	P00747	810 aa	Predicted RBP	10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	IGKV1D-16	P01601	117 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	THBS1	P07996	1170 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	FGF4	P08620	206 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	PF4V1	P10720	104 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	NID1	P14543	1247 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	CALB2	P22676	271 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	NTS	P30990	170 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	GABRA3	P34903	492 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	ATP5J2	P56134	94 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	NCALD	P61601	193 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	TNK1	Q13470	666 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	EXOC3L2	Q2M3D2	409 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	VPS26B	Q4G0F5	336 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	ESPNL	Q6ZVH7	1005 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	STK32C	Q86UX6	486 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	STEAP2	Q8NFT2	490 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	OR4C3	Q8NH37	302 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	CEP70	Q8NHQ1	597 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	FAM110B	Q8TC76	370 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	PLPPR2	Q96GM1	343 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	PPP1R36	Q96LQ0	422 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	EBPL	Q9BY08	206 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	ACTR6	Q9GZN1	396 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	GTF2A1L	Q9UNN4	478 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	TIMM22	Q9Y584	194 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	CAPN7	Q9Y6W3	813 aa		10.3	□□□□□ -0.76
CTNND1-238	ENST00000534647	UBFD1	O14562	309 aa	Known RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	SYNGR4	O95473	234 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	PLAU	P00749	431 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	PABPC4L	P0CB38	370 aa	Known RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	PRPS2	P11908	318 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	EPHA3	P29320	983 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	MNAT1	P51948	309 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	RPS4X	P62701	263 aa	Known RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	BTK	Q06187	659 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	LSM12	Q3MHD2	195 aa	Known RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	PDSS1	Q5T2R2	415 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	KANK2	Q63ZY3	851 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	CLEC6A	Q6EIG7	209 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	DDIAS	Q8IXT1	998 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	CDRT4	Q8N9R6	151 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	VPS37A	Q8NEZ2	397 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	OR2V1	Q8NHB1	315 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	LILRB1	Q8NHL6	650 aa	Predicted RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	TRMT61A	Q96FX7	289 aa	Known RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	RAB3IP	Q96QF0	476 aa	Predicted RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	OR52B2	Q96RD2	323 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	KCNA7	Q96RP8	456 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	WDR55	Q9H6Y2	383 aa	Predicted RBP	10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	MEAF6	Q9HAF1	191 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	GP6	Q9HCN6	339 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	ARMCX1	Q9P291	453 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	CCL27	Q9Y4X3	112 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	SNX8	Q9Y5X2	465 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	USF3	Q68DE3	2245 aa		10.29	□□□□□ -0.76
CTNND1-238	ENST00000534647	MXRA5	Q9NR99	2828 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647		A0A0J9YW62	118 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647		A0A1W2PQD3	144 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647		A0A1W2PRB8	838 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	GXYLT2	A0PJZ3	443 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	SHISA8	B8ZZ34	492 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	SDHD	O14521	159 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	SLC22A2	O15244	555 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	CXCL13	O43927	109 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	TBX19	O60806	448 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	GCM2	O75603	506 aa	Predicted RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	RSL1D1	O76021	490 aa	Known RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	OXSR1	O95747	527 aa	Predicted RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	GSTP1	P09211	210 aa	Known RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	DANCR	P0C864	163 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	UROS	P10746	265 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	PRPH2	P23942	346 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	AGTR1	P30556	359 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	IDUA	P35475	653 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	EIF1	P41567	113 aa	Known RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	FRK	P42685	505 aa	Predicted RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	FOXA1	P55317	472 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	MXRA7	P84157	204 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	GALE	Q14376	348 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	KIAA0040	Q15053	153 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	CLEC12B	Q2HXU8	276 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	PLPPR5	Q32ZL2	321 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	EXOSC6	Q5RKV6	272 aa	Known RBP	10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	NCMAP	Q5T1S8	102 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	MFSD12	Q6NUT3	480 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	NOXRED1	Q6NXP6	359 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	ZCCHC12	Q6PEW1	402 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	DNM1P46	Q6ZS02	220 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	GALNT10	Q86SR1	603 aa		10.28	□□□□□ -0.76
CTNND1-238	ENST00000534647	WFDC8	Q8IUA0	241 aa		10.28	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms