RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 BMP8AQ7Z5Y6 402 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 COX18Q8N8Q8 333 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 CYB561A3Q8NBI2 242 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 OR51A7Q8NH64 312 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 HERVK_113Q902F9 699 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 ERVMER34-1Q9H9K5 563 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 DUSP22Q9NRW4 184 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 MAT2BQ9NZL9 334 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 SLC23A1Q9UHI7 598 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 SLC35A3Q9Y2D2 325 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3EA0A087X179 549 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 LRRC72A6NJI9 287 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 SLC9B1P1A6NJY1 282 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 J3QLW9 94 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 SHOXO15266 292 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 UBL4AP11441 157 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 ZNF19P17023 458 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 PRKACBP22694 351 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 ACVR1BP36896 505 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 CRMP1Q14194 572 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 TRAM1Q15629 374 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 AMZ1Q400G9 498 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 BICRALQ6AI39 1079 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 CDK20Q8IZL9 346 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 CCL4L1Q8NHW4 92 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 TRMT10AQ8TBZ6 339 aaKnown RBP17.81■□□□□ 0.44
VPS28-213ENST00000530983 OR1E3Q8WZA6 343 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 C1QTNF7Q9BXJ2 289 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 NARFLQ9H6Q4 476 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 MRPS2Q9Y399 296 aaKnown RBP17.81■□□□□ 0.44
VPS28-213ENST00000530983 MED31Q9Y3C7 131 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 SPEF1Q9Y4P9 236 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3DA0A087WVF3 549 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3IA0A087WXS9 549 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 LOC105369274A0A096LPK9 316 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3LB9A6J9 549 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 FGF17O60258 216 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PTP4A3O75365 173 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3HP0C7X1 549 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PPP2CBP62714 309 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PPP2CAP67775 309 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 FCRL6Q6DN72 434 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3CQ6IPX1 549 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 SSX6Q7RTT6 188 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PRSS41Q7RTY9 318 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TBC1D3Q8IZP1 549 aaPredicted RBP17.8■□□□□ 0.44
VPS28-213ENST00000530983 OR4N4Q8N0Y3 316 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 CDRT4Q8N9R6 151 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TMEM52Q8NDY8 209 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 SMPDL3BQ92485 455 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 HSD17B8Q92506 261 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 SLC22A18Q96BI1 424 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PEX11GQ96HA9 241 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PRELID1Q9Y255 219 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 TMEM5Q9Y2B1 443 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 CACNG2Q9Y698 323 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 RIIAD1A6NNX1 92 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 ATP1B1P05026 303 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 GYPBP06028 91 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 SRP9P49458 86 aaKnown RBP17.8■□□□□ 0.44
VPS28-213ENST00000530983 AP2S1P53680 142 aaPredicted RBP17.8■□□□□ 0.44
VPS28-213ENST00000530983 TAS2R43P59537 309 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 BCL2L15Q5TBC7 163 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 DMKNQ6E0U4 476 aaPredicted RBP17.8■□□□□ 0.44
VPS28-213ENST00000530983 FAAH2Q6GMR7 532 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 FBXO46Q6PJ61 603 aaPredicted RBP17.8■□□□□ 0.44
VPS28-213ENST00000530983 GLRX5Q86SX6 157 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 OR13C5Q8NGS8 318 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 OR5J2Q8NH18 312 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 FAM131CQ96AQ9 280 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 SFXN1Q9H9B4 322 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 PRDM9Q9NQV7 894 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 KLHL1Q9NR64 748 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 NCKAP1Q9Y2A7 1128 aa17.8■□□□□ 0.44
VPS28-213ENST00000530983 SYNDIG1LA6NDD5 238 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 TNFSF14O43557 240 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 CHP2O43745 196 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 FZD7O75084 574 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 SOX30O94993 753 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 PPP1R3DO95685 299 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 POU3F3P20264 500 aaPredicted RBP17.79■□□□□ 0.44
VPS28-213ENST00000530983 MRPL28Q13084 256 aaKnown RBP17.79■□□□□ 0.44
VPS28-213ENST00000530983 EXOSC7Q15024 291 aaKnown RBP17.79■□□□□ 0.44
VPS28-213ENST00000530983 SLC36A2Q495M3 483 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 CDONQ4KMG0 1287 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 ZAR1Q86SH2 424 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 RFLNBQ8N5W9 214 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 BMPERQ8N8U9 685 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 GRHL3Q8TE85 626 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 STACQ99469 402 aa17.79■□□□□ 0.44
VPS28-213ENST00000530983 USP36Q9P275 1121 aaKnown RBP17.79■□□□□ 0.44
VPS28-213ENST00000530983 A0A087WV62 115 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 B8ZZF3 427 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 UGT2B7P16662 529 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 MAP3K8P41279 467 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 KIR2DL1P43626 348 aaPredicted RBP17.78■□□□□ 0.44
VPS28-213ENST00000530983 KIR2DS3Q14952 304 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 NTRK2Q16620 822 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 ACSM3Q53FZ2 586 aa17.78■□□□□ 0.44
VPS28-213ENST00000530983 FAM205BPQ63HN1 556 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms