RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 EFCAB9A8MZ26 197 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 BHLHE40O14503 412 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 GDF9O60383 454 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 RCBTB2O95199 551 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 RPL13AP3Q6NVV1 102 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 CBLN3Q6UW01 205 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 SLC34A3Q8N130 599 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 PHOSPHO1Q8TCT1 267 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 ATOH1Q92858 354 aaPredicted RBP18.98■□□□□ 0.63
VPS28-209ENST00000528142 C3orf49Q96BT1 292 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 OR5M11Q96RB7 305 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 RTN4RQ9BZR6 473 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 SLC26A1Q9H2B4 701 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 ICAM5Q9UMF0 924 aa18.98■□□□□ 0.63
VPS28-209ENST00000528142 MEN1O00255 615 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 GRK6P43250 576 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 COPZ1P61923 177 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 FHL1Q13642 323 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 DOC2BQ14184 412 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SLC46A3Q7Z3Q1 461 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 APCDD1LQ8NCL9 501 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 AGBL5Q8NDL9 886 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 OR52I1Q8NGK6 324 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 OMA1Q96E52 524 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 LOXL4Q96JB6 756 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SPSB2Q99619 263 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 TIMMDC1Q9NPL8 285 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 DIMT1Q9UNQ2 313 aaKnown RBP18.97■□□□□ 0.63
VPS28-209ENST00000528142 CARD8Q9Y2G2 431 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 LSM2Q9Y333 95 aaKnown RBP18.97■□□□□ 0.63
VPS28-209ENST00000528142 PCDHGB2Q9Y5G2 931 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SAGE2PA6NJ88 616 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 KHNYNO15037 678 aaKnown RBP18.97■□□□□ 0.63
VPS28-209ENST00000528142 ZNF264O43296 627 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SLC2A10O95528 541 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 GP1BAP07359 652 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SAGP10523 405 aaPredicted RBP18.97■□□□□ 0.63
VPS28-209ENST00000528142 BMP7P18075 431 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 ABCD3P28288 659 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 IL12BP29460 328 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 GRK5P34947 590 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 PNLIPRP2P54317 469 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 EMP2P54851 167 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 RNF4P78317 190 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 PLCXD2Q0VAA5 305 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 ARMCX4Q5H9R4 360 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SMARCD3Q6STE5 483 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 THSD4Q6ZMP0 1018 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 LNX2Q8N448 690 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 OR52L1Q8NGH7 329 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 LGALS12Q96DT0 336 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 CLEC2DQ9UHP7 191 aa18.97■□□□□ 0.63
VPS28-209ENST00000528142 SNTNA6NMZ2 147 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 GTPBP1O00178 669 aaKnown RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 SLC22A1O15245 554 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 HCN1O60741 890 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 LDOC1O95751 146 aaPredicted RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 ACP1P24666 158 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 CRYZQ08257 329 aaKnown RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 KLHL22Q53GT1 634 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 WBP2NLQ6ICG8 309 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 MRPL14Q6P1L8 145 aaKnown RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 TP53INP1Q96A56 240 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 PLEKHA8Q96JA3 519 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 CCNL2Q96S94 520 aaPredicted RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 WDR77Q9BQA1 342 aaPredicted RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 LAT2Q9GZY6 243 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 AKIRIN1Q9H9L7 192 aaPredicted RBP18.96■□□□□ 0.63
VPS28-209ENST00000528142 SLC24A3Q9HC58 644 aa18.96■□□□□ 0.63
VPS28-209ENST00000528142 TRAV27A0A087WT01 109 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.95■□□□□ 0.62
VPS28-209ENST00000528142 A0A1W2PQD3 144 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 CPNE3O75131 537 aaKnown RBP18.95■□□□□ 0.62
VPS28-209ENST00000528142 BCL10O95999 233 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 PSPHP78330 225 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 RAB40BQ12829 278 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 NANOGP1Q8N7R0 232 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 OR51A7Q8NH64 312 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 METTL21AQ8WXB1 218 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 RPL3LQ92901 407 aaKnown RBP18.95■□□□□ 0.62
VPS28-209ENST00000528142 ZNF524Q96C55 264 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 RNFT2Q96EX2 444 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 MGLLQ99685 303 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 FGF20Q9NP95 211 aaPredicted RBP18.95■□□□□ 0.62
VPS28-209ENST00000528142 RXFP3Q9NSD7 469 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 ERGIC3Q9Y282 383 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 PCDHGA5Q9Y5G8 931 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 LNP1A1A4G5 178 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 ALG1L2C9J202 215 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 GNB5O14775 395 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 RAB36O95755 333 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 CCL4P13236 92 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 ZNF28P17035 718 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 MTNR1AP48039 350 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 RGS6P49758 472 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 MC2RQ01718 297 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 MED22Q15528 200 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 TMEM44Q2T9K0 475 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 TMEM205Q6UW68 189 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 ATG4DQ86TL0 474 aaPredicted RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms