RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IGHV3-15A0A0B4J1V0 119 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 FAM234BA2RU67 622 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 RFXANKO14593 260 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 SMAD9O15198 467 aaKnown RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 RAMP1O60894 148 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 SMNDC1O75940 238 aaKnown RBP eCLIP9.5□□□□□ -0.89
CD44-227ENST00000528086 CSTAP01040 98 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 AGTR1P30556 359 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 UGT2B10P36537 528 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 CD79BP40259 229 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 EIF1P41567 113 aaKnown RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 IST1P53990 364 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 CARD18P57730 90 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 EEFSECP57772 596 aaKnown RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 RPS3AP61247 264 aaKnown RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 KCNJ10P78508 379 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 GPAT3Q53EU6 434 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 RPS26P11Q5JNZ5 115 aaPredicted RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 OR2A2Q6IF42 318 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 BLOC1S3Q6QNY0 202 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 STAC2Q6ZMT1 411 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 LRRC74BQ6ZQY2 392 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 HDXQ7Z353 690 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 ZNF550Q7Z398 422 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 VRK2Q86Y07 508 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 ADGRG3Q86Y34 549 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 CLIP4Q8N3C7 705 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 ATP6V1C2Q8NEY4 427 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 VPS37AQ8NEZ2 397 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 LRRC8CQ8TDW0 803 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 SLC38A5Q8WUX1 472 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 DTNBP1Q96EV8 351 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 THOC1Q96FV9 657 aaKnown RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 ARL5BQ96KC2 179 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 CLEC4MQ9H2X3 399 aaPredicted RBP9.5□□□□□ -0.89
CD44-227ENST00000528086 ACBD3Q9H3P7 528 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 TCF7L2Q9NQB0 619 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 EXD2Q9NVH0 621 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 RLIMQ9NVW2 624 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 ITGB1BP2Q9UKP3 347 aa9.5□□□□□ -0.89
CD44-227ENST00000528086 ALPK2Q86TB3 2170 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 ZC3H12DA2A288 527 aaKnown RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 SH3D21A4FU49 640 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 HMGB1P1B2RPK0 211 aaPredicted RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 H3BNH8 94 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 CYP7B1O75881 506 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 TGDSO95455 350 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 NUDT14O95848 222 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 BMP2P12643 396 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 PRG2P13727 222 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 RYKP34925 604 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 CPOXP36551 454 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 ACAA2P42765 397 aaKnown RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 CCR4P51679 360 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 AQP5P55064 265 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 CBFBQ13951 182 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 POU4F3Q15319 338 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 SGCBQ16585 318 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 LRIF1Q5T3J3 769 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 ATAD3BQ5T9A4 648 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 ANKRD34AQ69YU3 496 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 CGB2Q6NT52 195 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 SEZ6L2Q6UXD5 910 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 DLEU7Q6UYE1 221 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 MSANTD1Q6ZTZ1 278 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 EIF3MQ7L2H7 374 aaKnown RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 CHMP1BQ7LBR1 199 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 TMEM200AQ86VY9 491 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 KIF18BQ86Y91 864 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 TUSC5Q8IXB3 177 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 MIER2Q8N344 545 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 OR6K3Q8NGY3 331 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 ST8SIA1Q92185 356 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 MAL2Q969L2 176 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 DNAJA3Q96EY1 480 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 GMPPAQ96IJ6 420 aaPredicted RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 DACH2Q96NX9 599 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 HS3ST6Q96QI5 342 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 CCDC28BQ9BUN5 200 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 POLDIP3Q9BY77 421 aaKnown RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 OR11A1Q9GZK7 315 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 EXOSC3Q9NQT5 275 aaKnown RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 CTPS2Q9NRF8 586 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 INTS9Q9NV88 658 aaKnown RBP9.49□□□□□ -0.89
CD44-227ENST00000528086 KLHL28Q9NXS3 571 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 VAPAQ9P0L0 249 aa9.49□□□□□ -0.89
CD44-227ENST00000528086 MTORP42345 2549 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 DSCAMO60469 2012 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 EDF1O60869 148 aaKnown RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 GCM2O75603 506 aaPredicted RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 AGR2O95994 175 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 CPA2P48052 419 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 RAC3P60763 192 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 EEF1A1P68104 462 aaKnown RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 MERTKQ12866 999 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 SELENBP1Q13228 472 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 RGNQ15493 299 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 ADRM1Q16186 407 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 MRPL2Q5T653 305 aaKnown RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 EEF1A1P5Q5VTE0 462 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms