RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 A0A087WUJ7 227 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 C2orf72A6NCS6 295 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 LYNP07948 512 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 PNMTP11086 282 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 PTNP21246 168 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 CHMP24386 653 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 FPR3P25089 353 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 POU1F1P28069 291 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 PTGDSP41222 190 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 ST13P50502 369 aaKnown RBP19.18■□□□□ 0.66
VPS28-208ENST00000527797 SUMO3P55854 103 aaPredicted RBP19.18■□□□□ 0.66
VPS28-208ENST00000527797 AIMP2Q13155 320 aaKnown RBP19.18■□□□□ 0.66
VPS28-208ENST00000527797 RAPSNQ13702 412 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 MEP1AQ16819 746 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 ACER2Q5QJU3 275 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 BICRALQ6AI39 1079 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 PFN4Q8NHR9 129 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 NXPE2Q96DL1 559 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 PPP4R1LQ9P1A2 415 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 TMEM5Q9Y2B1 443 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 FAM186AA6NE01 2351 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 TRABD2BA6NFA1 517 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 ELOA3DA6NLF2 546 aaPredicted RBP19.17■□□□□ 0.66
VPS28-208ENST00000527797 H3BN98 237 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 KPNA4O00629 521 aaPredicted RBP19.17■□□□□ 0.66
VPS28-208ENST00000527797 IFI30P13284 250 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 MYBPC1Q00872 1141 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 SNTA1Q13424 505 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 PTGES3Q15185 160 aaKnown RBP19.17■□□□□ 0.66
VPS28-208ENST00000527797 ELOA3BQ3SY89 546 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 B3GNTL1Q67FW5 361 aaPredicted RBP19.17■□□□□ 0.66
VPS28-208ENST00000527797 TMEM81Q6P7N7 255 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 Q6ZPB1 254 aaPredicted RBP19.17■□□□□ 0.66
VPS28-208ENST00000527797 VASH2Q86V25 355 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 MEX3DQ86XN8 651 aaKnown RBP19.17■□□□□ 0.66
VPS28-208ENST00000527797 ELOA3Q8NG57 546 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 GPR119Q8TDV5 335 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 PSMF1Q92530 271 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 KLHDC3Q9BQ90 382 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 ING2Q9H160 280 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 CPNE5Q9HCH3 593 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 WIF1Q9Y5W5 379 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 HSPE1-MOB4S4R3N1 261 aa19.17■□□□□ 0.66
VPS28-208ENST00000527797 ANKUB1A6NFN9 424 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 GNB5O14775 395 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 KLF4O43474 513 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 SOX14O95416 240 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 GP1BBP13224 206 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 MSX1P28360 303 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 GGT2P36268 569 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 GPR4P46093 362 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 CTBP2P56545 445 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 OR5M10Q6IEU7 315 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 SLC30A6Q6NXT4 461 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 RASSF6Q6ZTQ3 369 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 ATG4DQ86TL0 474 aaPredicted RBP19.16■□□□□ 0.66
VPS28-208ENST00000527797 BPIFA2Q96DR5 249 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 ADAM19Q9H013 955 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 C12orf10Q9HB07 376 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 TEKT2Q9UIF3 430 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 PCSK5Q92824 1860 aa19.16■□□□□ 0.66
VPS28-208ENST00000527797 TNFAIP8O95379 198 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 ITGA3P26006 1051 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 MST1P26927 711 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 TACR3P29371 465 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 NUP107P57740 925 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 ISL1P61371 349 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 IL5RAQ01344 420 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 QPRTQ15274 297 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 TOMM34Q15785 309 aaPredicted RBP19.15■□□□□ 0.66
VPS28-208ENST00000527797 SLC22A10Q63ZE4 541 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 CLEC1AQ8NC01 280 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 PAQR8Q8TEZ7 354 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 ZNF524Q96C55 264 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 SGCZQ96LD1 299 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 LHPPQ9H008 270 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 MEPEQ9NQ76 525 aaPredicted RBP19.15■□□□□ 0.66
VPS28-208ENST00000527797 C20orf141Q9NUB4 165 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 TAS2R10Q9NYW0 307 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 MED11Q9P086 117 aa19.15■□□□□ 0.66
VPS28-208ENST00000527797 IGLV3-32A0A0A0MS00 114 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 ZAR1LA6NP61 321 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 CDC40O60508 579 aaKnown RBP eCLIP19.14■□□□□ 0.66
VPS28-208ENST00000527797 TP53P04637 393 aaPredicted RBP19.14■□□□□ 0.66
VPS28-208ENST00000527797 CD47Q08722 323 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 ISLR2Q6UXK2 745 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 TMPRSS11FQ6ZWK6 438 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 GPALPP1Q8IXQ4 340 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 ZNF786Q8N393 782 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 TMEM234Q8WY98 164 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 DPH1Q9BZG8 443 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 SLC19A3Q9BZV2 496 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 SH2D2AQ9NP31 389 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 STMN3Q9NZ72 180 aa19.14■□□□□ 0.66
VPS28-208ENST00000527797 UNC119BA6NIH7 251 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 IGFBP1P08833 259 aaPredicted RBP19.14■□□□□ 0.65
VPS28-208ENST00000527797 MAKP20794 623 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 CRYZQ08257 329 aaKnown RBP19.14■□□□□ 0.65
VPS28-208ENST00000527797 FOXC1Q12948 553 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 TBC1D25Q3MII6 688 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms