RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 EPB41P11171 864 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 HIST1H2ADP20671 130 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CPT2P23786 658 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PSMA3P25788 255 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 NMBRP28336 390 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PRDX3P30048 256 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 OTX2P32243 289 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SLC26A3P40879 764 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 MAPK9P45984 424 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SPINT3P49223 89 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PRLHRP49683 370 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 HLCSP50747 726 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 KPNA2P52292 529 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 DIO3P55073 304 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CASP9P55211 416 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 NUP107P57740 925 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 RPS4XP62701 263 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 FKBP3Q00688 224 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 LRMPQ12912 555 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 BIKQ13323 160 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 OR1C1Q15619 314 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TAZQ16635 292 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 KYNUQ16719 465 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TMEM249Q2WGJ8 235 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 FAM174BQ3ZCQ3 159 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ZNF658BQ4V348 819 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 ANKRD20A8PQ5CZ79 823 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CMPK2Q5EBM0 449 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 BEX5Q5H9J7 111 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 C1orf185Q5T7R7 199 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ARMC12Q5T9G4 340 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 FAM205BPQ63HN1 556 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 LRRC66Q68CR7 880 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CYB5R2Q6BCY4 276 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 IRGCQ6NXR0 463 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 FAM199XQ6PEV8 388 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 SLC25A47Q6Q0C1 308 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TMEM270Q6UE05 265 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 FIP1L1Q6UN15 594 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 KDELC1Q6UW63 502 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 UNC5DQ6UXZ4 953 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SCARA5Q6ZMJ2 495 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 GBP6Q6ZN66 633 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CDHR3Q6ZTQ4 885 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 BTN2A1Q7KYR7 527 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 COX15Q7KZN9 410 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CENPQQ7L2Z9 268 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 HIST3H2AQ7L7L0 130 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 R3HCC1LQ7Z5L2 792 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 AMZ2Q86W34 360 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TBC1D21Q8IYX1 336 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 DEFB106AQ8N104 65 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 LRRC25Q8N386 305 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 RNF10Q8N5U6 811 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 TMEM156Q8N614 296 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 POM121L12Q8N7R1 296 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TTC29Q8NA56 475 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 FAM184AQ8NB25 1140 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 Q8NBF4 154 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TMEM35BQ8NCS4 154 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PLPP5Q8NEB5 264 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 GDAP1Q8TB36 358 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ZPLD1Q8TCW7 415 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 MIPOL1Q8TD10 442 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PATE1Q8WXA2 126 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ZNF606Q8WXB4 792 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 KLK6Q92876 244 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PEX13Q92968 403 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SNX21Q969T3 373 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SLC35C1Q96A29 364 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TADA1Q96BN2 335 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ULK4Q96C45 1275 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ZBED6CLQ96FA7 236 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 ELMOD3Q96FG2 381 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 NSL1Q96IY1 281 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CNDP1Q96KN2 507 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 C1orf147Q96MC9 270 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 TSGA13Q96PP4 275 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 PPP1R2P1Q96PQ5 205 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TNFRSF13CQ96RJ3 184 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 RUFY1Q96T51 708 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SMR3AQ99954 134 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 C11orf70Q9BRQ4 267 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TUBGCP2Q9BSJ2 902 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 CNPY3Q9BT09 278 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 WRAP53Q9BUR4 548 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 FICDQ9BVA6 458 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TBC1D10AQ9BXI6 508 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 TRIM7Q9C029 511 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SLC7A5P2Q9GIP4 190 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 POLR1EQ9GZS1 481 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 ABCG8Q9H221 673 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 ZSCAN16Q9H4T2 348 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 AKIRIN1Q9H9L7 192 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 IL1RL2Q9HB29 575 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 EML4Q9HC35 981 aaKnown RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 FAM207AQ9NSI2 230 aaPredicted RBP1.3□□□□□ -2.2
CD44-212ENST00000524922 FAIMQ9NVQ4 179 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SOHLH2Q9NX45 425 aa1.3□□□□□ -2.2
CD44-212ENST00000524922 SPHK1Q9NYA1 384 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms