RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GIFP27352 417 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TRIM23P36406 574 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 PITPNBP48739 271 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 NKPD1Q17RQ9 610 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 SMUG1Q53HV7 270 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 TCTN3Q6NUS6 607 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 PARM1Q6UWI2 310 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 OR2L8Q8NGY9 312 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 CCDC107Q8WV48 283 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 SLC35B4Q969S0 331 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ELP4Q96EB1 424 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 DUS3LQ96G46 650 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 OR1F2PQ96R84 312 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 PCDHB16Q9NRJ7 776 aa10.92□□□□□ -0.66
SYNPO-204ENST00000519664 SIDT1Q9NXL6 827 aaKnown RBP10.92□□□□□ -0.66
SYNPO-204ENST00000519664 ZC3H12DA2A288 527 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 FAM155AB1AL88 458 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 C9J4A7 227 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 MRPS14O60783 128 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 CSO75390 466 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 B3GALNT1O75752 331 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SCGB1D2O95969 90 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SFTPDP35247 375 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 RORAP35398 523 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 RPL35P42766 123 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ACTA2P62736 377 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ACTG2P63267 376 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 Q6ZNB5 142 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 LACC1Q8IV20 430 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 MNTQ99583 582 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 TIMM29Q9BSF4 260 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SIRT5Q9NXA8 310 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 MGAT4AQ9UM21 535 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 A0A087WUU8 490 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PRAMEF2O60811 474 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PRH1P02810 166 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PRR35P0CG20 571 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 JUNBP17275 347 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 TEAD1P28347 426 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 CBX5P45973 191 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 RABIFP47224 123 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 S100A10P60903 97 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 GLT8D1Q68CQ7 371 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ZER1Q7Z7L7 766 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PNLDC1Q8NA58 520 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 NLGN4YQ8NFZ3 816 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SMAP2Q8WU79 429 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 MR1Q95460 341 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PSD2Q9BQI7 771 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF471Q9BX82 626 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM38AQ9H6F2 299 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 OR2S2Q9NQN1 319 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 C1GALT1Q9NS00 363 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SAGE1Q9NXZ1 904 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ASIC5Q9NY37 505 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 WSB2Q9NYS7 404 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SCN3AQ9NY46 2000 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PIP5K1CO60331 668 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PAHP00439 452 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 UCHL1P09936 223 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 LIPCP11150 499 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SNRPBP14678 240 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 UGT2B7P16662 529 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 M6PRP20645 277 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 FTMTQ8N4E7 242 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 OR1E3Q8WZA6 343 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 RBM38Q9H0Z9 239 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 LMAN1LQ9HAT1 526 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 TBX21Q9UL17 535 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 EP300Q09472 2414 aaPredicted RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ZNFX1Q9P2E3 1918 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 A0A0J9YY10 115 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 OR2W5A6NFC9 320 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SNAPC5O75971 98 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 APEHP13798 732 aaKnown RBP10.91□□□□□ -0.66
SYNPO-204ENST00000519664 PGCP20142 388 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ETV1P50549 477 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ART1P52961 327 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM184AQ6ZMB5 413 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 SLC35F2Q8IXU6 374 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 AVL9Q8NBF6 648 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 OR5AK2Q8NH90 309 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 NPRL2Q8WTW4 380 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 ASB16Q96NS5 453 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 KLK4Q9Y5K2 254 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 OR51B4Q9Y5P0 310 aa10.91□□□□□ -0.66
SYNPO-204ENST00000519664 FAM221BA6H8Z2 402 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 HMGN4O00479 90 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 MAGEB4O15481 346 aaPredicted RBP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 MAKP20794 623 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 HNRNPKP61978 463 aaKnown RBP eCLIP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 TIAL1Q01085 375 aaKnown RBP eCLIP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 NFATC4Q14934 902 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 LPAL2Q16609 132 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 CDNFQ49AH0 187 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 NKAPLQ5M9Q1 402 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 MEPCEQ7L2J0 689 aaKnown RBP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 ANKRD33Q7Z3H0 272 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM234Q8WY98 164 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms