RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZC3HAV1LQ96H79 300 aaKnown RBP10.28□□□□□ -0.76
VCAN-212ENST00000515397 MAGEB18Q96M61 343 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 WFIKKN1Q96NZ8 548 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 TRNT1Q96Q11 434 aaKnown RBP10.28□□□□□ -0.76
VCAN-212ENST00000515397 OR5B2Q96R09 309 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 POLDIP3Q9BY77 421 aaKnown RBP10.28□□□□□ -0.76
VCAN-212ENST00000515397 KLHL4Q9C0H6 718 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 ACBD3Q9H3P7 528 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 PIGMQ9H3S5 423 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 NPHS2Q9NP85 383 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 CTPS2Q9NRF8 586 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 KLHL28Q9NXS3 571 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 FOXD3Q9UJU5 478 aaPredicted RBP10.28□□□□□ -0.76
VCAN-212ENST00000515397 ZNF175Q9Y473 711 aa10.28□□□□□ -0.76
VCAN-212ENST00000515397 ROS1P08922 2347 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 HRNRQ86YZ3 2850 aaPredicted RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 UQCRHLA0A096LP55 91 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 MSTNO14793 375 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 BCHEP06276 602 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 CRHP06850 196 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 GKN3PP0CG01 181 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 TFPIP10646 304 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 POU2F1P14859 743 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 CAPN3P20807 821 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 IDH2P48735 452 aaKnown RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 SUMO3P55854 103 aaPredicted RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 STX1BP61266 288 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 PDSS1Q5T2R2 415 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 BLOC1S3Q6QNY0 202 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 LRRC74BQ6ZQY2 392 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 PLEKHM3Q6ZWE6 761 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 NUFIP2Q7Z417 695 aaKnown RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 CDC20BQ86Y33 519 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 MSRB3Q8IXL7 192 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 C10orf111Q8N326 155 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 FAM222BQ8WU58 562 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 SLC38A5Q8WUX1 472 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 MRGPRX4Q96LA9 322 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 CCDC28BQ9BUN5 200 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 OR11A1Q9GZK7 315 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 CLEC4MQ9H2X3 399 aaPredicted RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 RMND5AQ9H871 391 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 COQ10BQ9H8M1 238 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 MTHFD2LQ9H903 347 aaPredicted RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 HHATLQ9HCP6 504 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 POLE3Q9NRF9 147 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 RASSF1Q9NS23 344 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 ACER3Q9NUN7 267 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 SLC25A37Q9NYZ2 338 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 MCTS1Q9ULC4 181 aaKnown RBP10.27□□□□□ -0.77
VCAN-212ENST00000515397 PROCRQ9UNN8 238 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 AKAP9Q99996 3911 aa10.27□□□□□ -0.77
VCAN-212ENST00000515397 PRRC2AP48634 2157 aaKnown RBP10.26□□□□□ -0.77
VCAN-212ENST00000515397 SH3D21A4FU49 640 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 AGAP5A6NIR3 686 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 CLIC1O00299 241 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 TFPTP0C1Z6 253 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 IL7RP16871 459 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 PGCP20142 388 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 ADH6P28332 368 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 SLC7A1P30825 629 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 CD79BP40259 229 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 DSTNP60981 165 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 GUSBP1Q15486 140 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 TSC22D1Q15714 1073 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 ZNF239Q16600 458 aaKnown RBP10.26□□□□□ -0.77
VCAN-212ENST00000515397 SLC25A53Q5H9E4 307 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 MRPL2Q5T653 305 aaKnown RBP10.26□□□□□ -0.77
VCAN-212ENST00000515397 ALKBH2Q6NS38 261 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 FCRLAQ7L513 359 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 TUSC5Q8IXB3 177 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 CLIP4Q8N3C7 705 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 ARFGAP2Q8N6H7 521 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 WDR60Q8WVS4 1066 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 SPDL1Q96EA4 605 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 TMEM19Q96HH6 336 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 REXO5Q96IC2 774 aaKnown RBP10.26□□□□□ -0.77
VCAN-212ENST00000515397 SLC24A3Q9HC58 644 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 SLC52A3Q9NQ40 469 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 C6orf203Q9P0P8 240 aaPredicted RBP10.26□□□□□ -0.77
VCAN-212ENST00000515397 LIPT1Q9Y234 373 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 SLC35A3Q9Y2D2 325 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 PLEKHA6Q9Y2H5 1048 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 EMC9Q9Y3B6 208 aa10.26□□□□□ -0.77
VCAN-212ENST00000515397 F8P00451 2351 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 A0A0G2JND7 137 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 A0A1W2PPR1 153 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 FAM221AA4D161 298 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 ENO4A6NNW6 628 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 CASKO14936 926 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 FRS3O43559 492 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 EDF1O60869 148 aaKnown RBP10.25□□□□□ -0.77
VCAN-212ENST00000515397 DNAJA2O60884 412 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 SS18L1O75177 396 aaPredicted RBP10.25□□□□□ -0.77
VCAN-212ENST00000515397 ZCCHC18P0CG32 403 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 FCGR2AP12318 317 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 PRG2P13727 222 aa10.25□□□□□ -0.77
VCAN-212ENST00000515397 EDNRAP25101 427 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms