RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ACSF3Q4G176 576 aaPredicted RBP12.87□□□□□ -0.35
NUP54-216ENST00000514901 PDSS1Q5T2R2 415 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 NSUN5P2Q63ZY6 315 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 RTL6Q6ICC9 239 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 C8orf82Q6P1X6 216 aaPredicted RBP12.87□□□□□ -0.35
NUP54-216ENST00000514901 XKRXQ6PP77 449 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 ESPNLQ6ZVH7 1005 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 CCDC80Q76M96 950 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 GRINAQ7Z429 371 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 ARMC8Q8IUR7 673 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 LACC1Q8IV20 430 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 SLC15A3Q8IY34 581 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 CLIP4Q8N3C7 705 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 ZNF808Q8N4W9 903 aaPredicted RBP12.87□□□□□ -0.35
NUP54-216ENST00000514901 RASSF5Q8WWW0 418 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 KLHDC3Q9BQ90 382 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 PINK1Q9BXM7 581 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 RLIMQ9NVW2 624 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 NDE1Q9NXR1 346 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 KLHL28Q9NXS3 571 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 SLC13A4Q9UKG4 626 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 FAM215AQ9Y5M1 114 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 SHISA8B8ZZ34 492 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 M0QX08 132 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 ADAMDEC1O15204 470 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 MFN2O95140 757 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 IFNA14P01570 189 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 C8BP07358 591 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 AQP1P29972 269 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 TIMP3P35625 211 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 SLC1A3P43003 542 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 IDH2P48735 452 aaKnown RBP12.86□□□□□ -0.35
NUP54-216ENST00000514901 MAP2K6P52564 334 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 PSME3P61289 254 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 PLAURQ03405 335 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 MERTKQ12866 999 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 SELENBP1Q13228 472 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 RIPPLY2Q5TAB7 128 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 PLEKHM3Q6ZWE6 761 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 ADGRE4PQ86SQ3 457 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 LILRA2Q8N149 483 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 FITM2Q8N6M3 262 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 OR2T12Q8NG77 320 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 ASB5Q8WWX0 329 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 TUBA1CQ9BQE3 449 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 PIF1Q9H611 641 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 ARL8BQ9NVJ2 186 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 CMTM6Q9NX76 183 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 COQ3Q9NZJ6 369 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 CHST2Q9Y4C5 530 aa12.86□□□□□ -0.35
NUP54-216ENST00000514901 SPIN1Q9Y657 262 aaPredicted RBP12.86□□□□□ -0.35
NUP54-216ENST00000514901 USP9YO00507 2555 aaPredicted RBP12.86□□□□□ -0.35
NUP54-216ENST00000514901 ELOVL7A1L3X0 281 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 HSPB2A8KAH6 182 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 SYT5O00445 386 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 ZG16O60844 167 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 IL2RAP01589 272 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 ACAA2P42765 397 aaKnown RBP12.85□□□□□ -0.35
NUP54-216ENST00000514901 SLC7A2P52569 658 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 SUCLG1P53597 346 aaKnown RBP12.85□□□□□ -0.35
NUP54-216ENST00000514901 NUP107P57740 925 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 ADORA2A-AS1P86434 159 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 LIPEQ05469 1076 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 HSPB2Q16082 182 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 WBP2NLQ6ICG8 309 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 MRGPRGQ86SM5 289 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 UBQLNLQ8IYU4 475 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 MICU2Q8IYU8 434 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 MARVELD2Q8N4S9 558 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 TNIP2Q8NFZ5 429 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 OR10Q1Q8NGQ4 319 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 SLC26A7Q8TE54 656 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 SLC25A43Q8WUT9 341 aaPredicted RBP12.85□□□□□ -0.35
NUP54-216ENST00000514901 SMPDL3BQ92485 455 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 WNT2BQ93097 391 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 NSL1Q96IY1 281 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 TRIB1Q96RU8 372 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 NPAS1Q99742 590 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 TM9SF2Q99805 663 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 SPAG4Q9NPE6 437 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 TIGARQ9NQ88 270 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 ZNF175Q9Y473 711 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 NCOA6Q14686 2063 aaPredicted RBP12.85□□□□□ -0.35
NUP54-216ENST00000514901 COL12A1Q99715 3063 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 ICE1Q9Y2F5 2266 aa12.85□□□□□ -0.35
NUP54-216ENST00000514901 ARHGAP21Q5T5U3 1957 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 MBD3L4A6NDZ8 208 aaPredicted RBP12.84□□□□□ -0.35
NUP54-216ENST00000514901 MBD3L3A6NE82 208 aaPredicted RBP12.84□□□□□ -0.35
NUP54-216ENST00000514901 MBD3L5A6NJ08 208 aaPredicted RBP12.84□□□□□ -0.35
NUP54-216ENST00000514901 CCT8L1PA6NM43 557 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 CLCA1A8K7I4 914 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 EIF1AYO14602 144 aaKnown RBP12.84□□□□□ -0.35
NUP54-216ENST00000514901 AP3D1O14617 1153 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 SEC14L5O43304 696 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 EFNA2O43921 213 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 ADAM11O75078 769 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 GCM2O75603 506 aaPredicted RBP12.84□□□□□ -0.35
NUP54-216ENST00000514901 LGI1O95970 557 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 GKN3PP0CG01 181 aa12.84□□□□□ -0.35
NUP54-216ENST00000514901 CHRNB4P30926 498 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms