RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 POPDC2Q9HBU9 364 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 SUN2Q9UH99 717 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 PPIAL4AQ9Y536 164 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 ZNF705EA8MWA4 302 aaPredicted RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 B4DXG7 233 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 KIF2AO00139 706 aaPredicted RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 POLR2DO15514 142 aaKnown RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 PRKAB2O43741 272 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 ZNF354AO60765 605 aaPredicted RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 RAMP3O60896 148 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 TBX6O95947 436 aaPredicted RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 FGF9P31371 208 aaPredicted RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 TDO2P48775 406 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 EFNA3P52797 238 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 RIPK4P57078 832 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 CXCL6P80162 114 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 QRICH1Q2TAL8 776 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 CTSL3PQ5NE16 218 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 OR2A2Q6IF42 318 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 FAM228AQ86W67 206 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 TCEANC2Q96MN5 208 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 IL4I1Q96RQ9 567 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 ATOH8Q96SQ7 321 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 APOL2Q9BQE5 337 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 NAT10Q9H0A0 1025 aaKnown RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.66□□□□□ -1.5
NUP54-215ENST00000514313 ETNK2Q9NVF9 386 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 WARS2Q9UGM6 360 aaKnown RBP5.66□□□□□ -1.5
NUP54-215ENST00000514313 ZNF639Q9UID6 485 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 IFT52Q9Y366 437 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 KANK1Q14678 1352 aa5.66□□□□□ -1.5
NUP54-215ENST00000514313 ZNF716A6NP11 495 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 RGS16O15492 202 aaPredicted RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 MED7O43513 233 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 CXCL13O43927 109 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 DUSP14O95147 198 aaKnown RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 GNA14O95837 355 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 ZNF735P0CB33 412 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 PGAM2P15259 253 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 MX1P20591 662 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 ADORA2BP29275 332 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 SHC1P29353 583 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 RDXP35241 583 aaKnown RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 UGT1A5P35504 534 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 RPL29P47914 159 aaKnown RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 RPL34P49207 117 aaKnown RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 FNTAP49354 379 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 DUSP3P51452 185 aaPredicted RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 SUCLG1P53597 346 aaKnown RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 ATP5IP56385 69 aaPredicted RBP5.65□□□□□ -1.5
NUP54-215ENST00000514313 CCNA1P78396 465 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 TGIF1Q15583 401 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 DPYSL2Q16555 572 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 EIPR1Q53HC9 387 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 NANOGNBQ7Z5D8 188 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 SERINC5Q86VE9 423 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 MTURNQ8N3F0 131 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 NECAB1Q8N987 351 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 TIMD4Q96H15 378 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 MS4A14Q96JA4 679 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 ZNF670Q9BS34 389 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 ZNF385DQ9H6B1 395 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 YY1AP1Q9H869 796 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 B3GNT2Q9NY97 397 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 DPM3Q9P2X0 92 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 RSPH14Q9UHP6 348 aa5.65□□□□□ -1.5
NUP54-215ENST00000514313 IGHV3-35A0A0C4DH35 117 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 SGK1O00141 431 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 SULT2B1O00204 365 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 GPAA1O43292 621 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 ERLIN1O75477 346 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 AP2A1O95782 977 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 PGK1P00558 417 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 SLC2A3P11169 496 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 CCDC130P13994 396 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 NMT1P30419 496 aaKnown RBP5.64□□□□□ -1.51
NUP54-215ENST00000514313 MAP3K8P41279 467 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 CDH4P55283 916 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 RPL32P62910 135 aaKnown RBP5.64□□□□□ -1.51
NUP54-215ENST00000514313 MRPS11P82912 194 aaKnown RBP5.64□□□□□ -1.51
NUP54-215ENST00000514313 PRAMEF5Q5TYX0 476 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 PRAMEF6Q5VXH4 476 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 RUFY3Q7L099 469 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 ALLCQ8N6M5 410 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 AGAP11Q8TF27 550 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 C1orf147Q96MC9 270 aaPredicted RBP5.64□□□□□ -1.51
NUP54-215ENST00000514313 OR5M11Q96RB7 305 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 CHRDL1Q9BU40 450 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 TRIM62Q9BVG3 475 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 VPS37BQ9H9H4 285 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 NANSQ9NR45 359 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 PRPF19Q9UMS4 504 aaKnown RBP5.64□□□□□ -1.51
NUP54-215ENST00000514313 ERVW-1Q9UQF0 538 aa5.64□□□□□ -1.51
NUP54-215ENST00000514313 RPAP1Q9BWH6 1393 aaPredicted RBP5.64□□□□□ -1.51
NUP54-215ENST00000514313 A0A087WWV3 80 aa5.63□□□□□ -1.51
NUP54-215ENST00000514313 GOLGA8OA6NCC3 632 aa5.63□□□□□ -1.51
NUP54-215ENST00000514313 TRDCB7Z8K6 153 aa5.63□□□□□ -1.51
NUP54-215ENST00000514313 GOLGA8NF8WBI6 632 aa5.63□□□□□ -1.51
NUP54-215ENST00000514313 OR10H3O60404 316 aa5.63□□□□□ -1.51
NUP54-215ENST00000514313 ZNF254O75437 659 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms