RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 WDR4P57081 412 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 WDR5P61964 334 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 UBE2G1P62253 170 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 PIGFQ07326 219 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 UGT2A3Q6UWM9 527 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 DBX2Q6ZNG2 339 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TSEN54Q7Z6J9 526 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 MRPL10Q7Z7H8 261 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 ADGRA1Q86SQ6 560 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TSPAN33Q86UF1 283 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 CATSPERDQ86XM0 798 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 IRF2BP1Q8IU81 584 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 OR1M1Q8NGA1 313 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TMEM80Q96HE8 168 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 F2RL3Q96RI0 385 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 LMF1Q96S06 567 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 WDR83Q9BRX9 315 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 TIMM29Q9BSF4 260 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 UFSP2Q9NUQ7 469 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 FAM120CQ9NX05 1096 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 BET1O15155 118 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 EFSO43281 561 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 MED6O75586 246 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 BLVRBP30043 206 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 SIX1Q15475 284 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 QPCTQ16769 361 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ALKBH6Q3KRA9 238 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 CLEC20AQ6ZU45 233 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ZDHHC14Q8IZN3 488 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ZNF321PQ8N8H1 164 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ROBO4Q8WZ75 1007 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 CDKN2AIPNLQ96HQ2 116 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 PFDN5Q99471 154 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TUBB1Q9H4B7 451 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 OLAHQ9NV23 265 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 INTS6Q9UL03 887 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 J3KR12 359 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TRMUO75648 421 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 PRPS1P60891 318 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 FLI1Q01543 452 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 CDK5R2Q13319 367 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 KIR2DS3Q14952 304 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 HFEQ30201 348 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 MANEALQ5VSG8 457 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 THSD4Q6ZMP0 1018 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 HMGN2P46Q86SG4 172 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TSEN2Q8NCE0 465 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 OR5AK2Q8NH90 309 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 KISS1RQ969F8 398 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 FYTTD1Q96QD9 318 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 FUCA2Q9BTY2 467 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 C20orf24Q9BUV8 137 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 LIN7CQ9NUP9 197 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 MKS1Q9NXB0 559 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 OR5V1Q9UGF6 321 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TIMM9Q9Y5J7 89 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 F2RL2O00254 374 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ACOX3O15254 700 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 PIPP12273 146 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 TBPL1P62380 186 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 HNF4GQ14541 408 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 KIAA0930Q6ICG6 404 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 ZNF662Q6ZS27 426 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 PINX1Q96BK5 328 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 FAM163AQ96GL9 167 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 OR4K3Q96R72 315 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 SLC30A3Q99726 388 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 CXorf56Q9H5V9 222 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 RABL2AQ9UBK7 228 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 RABL2BQ9UNT1 228 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ADGRB2O60241 1585 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 XKRY2A2RUG3 117 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 LRRC3CA6NJW4 275 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 SUSD5O60279 629 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 PRAMEF4O60810 478 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 RFPL1O75677 317 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 HLA-DOBP13765 273 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 NFATC3Q12968 1075 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 GPR176Q14439 515 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 UNC50Q53HI1 259 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 RTL6Q6ICC9 239 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 UBE2DNLQ8IWF7 75 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TRMT2AQ8IZ69 625 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 ZFP82Q8N141 532 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 SFXN5Q8TD22 340 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 TANKQ92844 425 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 EMG1Q92979 244 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 INPP4AQ96PE3 977 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 SLC22A4Q9H015 551 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 ACP6Q9NPH0 428 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 INIPQ9NRY2 104 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 SMPD3Q9NY59 655 aaPredicted RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 NOCTQ9UK39 431 aaKnown RBP8.38□□□□□ -1.07
VCAN-208ENST00000512590 URGCP-MRPS24S4R325 110 aa8.38□□□□□ -1.07
VCAN-208ENST00000512590 AGAP14A8MT82 685 aa8.37□□□□□ -1.07
VCAN-208ENST00000512590 MPC1LP0DKB6 136 aa8.37□□□□□ -1.07
VCAN-208ENST00000512590 PRKACBP22694 351 aa8.37□□□□□ -1.07
VCAN-208ENST00000512590 ARL2P36404 184 aa8.37□□□□□ -1.07
VCAN-208ENST00000512590 RAB5BP61020 215 aa8.37□□□□□ -1.07
VCAN-208ENST00000512590 RACK1P63244 317 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms