RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 OPRD1P41143 372 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 MTAPQ13126 283 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 BIKQ13323 160 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 PIN1Q13526 163 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 RPS26P11Q5JNZ5 115 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 C9orf131Q5VYM1 1079 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 JMJD6Q6NYC1 403 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ALKAL1Q6UXT8 129 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ETFBKMTQ8IXQ9 262 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 FAM98AQ8NCA5 519 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 DUSP19Q8WTR2 217 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 MAFIPQ8WZ33 124 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 OSTF1Q92882 214 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 DUSP22Q9NRW4 184 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 GPATCH2Q9NW75 528 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 TP53TG5Q9Y2B4 290 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 GFYI3L273 518 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 PPM1DO15297 605 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 STK16O75716 305 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ARG1P05089 322 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 RAB5AP20339 215 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 MAPK3P27361 379 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 SOAT1P35610 550 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 NSG1P42857 185 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 CSNK1EP49674 416 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 PKIAP61925 76 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 LSM6P62312 80 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 IRF8Q02556 426 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ACVR1Q04771 509 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 MAJINQ3KP22 176 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 PRRT3Q5FWE3 981 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 PTRHD1Q6GMV3 140 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF248Q8NDW4 579 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC7A13Q8TCU3 470 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 SEC22AQ96IW7 307 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 NRIP2Q9BQI9 281 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ADGRE3Q9BY15 652 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 PLA2G12AQ9BZM1 189 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 CHST8Q9H2A9 424 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 NDOR1Q9UHB4 597 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 FBXL21Q9UKT6 434 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 ZDHHC8Q9ULC8 765 aa11.21□□□□□ -0.62
LIMCH1-213ENST00000511496 TMEM189-UBE2V1I3L0A0 370 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 PCDH8O95206 1070 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 NFATC1O95644 943 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 SFTA3P0C7M3 94 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 AMD1P17707 334 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 MRPS10P82664 201 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 TNFRSF9Q07011 255 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF239Q16600 458 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 C10orf91Q5T1B1 145 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 AHDC1Q5TGY3 1603 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 RNF165Q6ZSG1 346 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 CXXC5Q7LFL8 322 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 NPAS3Q8IXF0 933 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 PRR18Q8N4B5 295 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF485Q8NCK3 441 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 OR51G2Q8NGK0 314 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 OR13C5Q8NGS8 318 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 BSCL2Q96G97 398 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 MTERF1Q99551 399 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 OCSTAMPQ9BR26 566 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC35A5Q9BS91 424 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 AK6Q9Y3D8 172 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 M0R036 132 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 MAGEB1P43366 347 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 TDGQ13569 410 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 GRB14Q14449 540 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 ACTBL2Q562R1 376 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 NKAPLQ5M9Q1 402 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 ZDHHC20Q5W0Z9 365 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 CDC73Q6P1J9 531 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 PRICKLE2Q7Z3G6 844 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 CMTM7Q96FZ5 175 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 ASB16Q96NS5 453 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 TRMT61BQ9BVS5 477 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 CIPCQ9C0C6 399 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 EGLN1Q9GZT9 426 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF219Q9P2Y4 722 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 KCNIP3Q9Y2W7 256 aa11.2□□□□□ -0.62
LIMCH1-213ENST00000511496 TRAV14DV4A0A0A6YYC5 116 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 IRGMA1A4Y4 181 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 PHOX2AO14813 284 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 ONECUT3O60422 494 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 RAB3DO95716 219 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 THEGLP0DJG4 465 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 PBLDP30039 288 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 GNALP38405 381 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 GLP1RP43220 463 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 RING1Q06587 406 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 NDUFAF6Q330K2 333 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 C9orf57Q5W0N0 161 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 IQCHQ86VS3 1027 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 LSRQ86X29 649 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 CMTM4Q8IZR5 234 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 ARRDC2Q8TBH0 407 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 GPBAR1Q8TDU6 330 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 ST7LQ8TDW4 575 aa11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 RCC2Q9P258 522 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-213ENST00000511496 CORO2BQ9UQ03 480 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms