RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 FOXS1O43638 330 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TNFSF15O95150 251 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 OTX2P32243 289 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC16A1P53985 500 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 NPRL3Q12980 569 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 GAB1Q13480 694 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 GPR50Q13585 617 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PEAR1Q5VY43 1037 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 OR2T5Q6IEZ7 315 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 FAM71E1Q6IPT2 247 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 MZT2BQ6NZ67 158 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM81Q6P7N7 255 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 WDR74Q6RFH5 385 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 FAM181AQ8N9Y4 354 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 OR9Q2Q8NGE9 314 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 OR2T29Q8NH02 315 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CNRIP1Q96F85 164 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ZBED6CLQ96FA7 236 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 FEVQ99581 238 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CDC6Q99741 560 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ACTR6Q9GZN1 396 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CHST8Q9H2A9 424 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 DDX31Q9H8H2 851 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TPT1P8Q9HAU6 139 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CCNB1IP1Q9NPC3 277 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 IFT46Q9NQC8 304 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 KCMF1Q9P0J7 381 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PHF11Q9UIL8 331 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 OSGIN1Q9UJX0 560 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 SSR3Q9UNL2 185 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 EXO1Q9UQ84 846 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 SPIN1Q9Y657 262 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PIEZO2Q9H5I5 2752 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 A0A0A6YYD5 115 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 C1orf226A1L170 272 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 C5orf58C9J3I9 102 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ORC5O43913 435 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 HEXBP07686 556 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 MPIP34949 423 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 RORCP51449 518 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 EEFSECP57772 596 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 INSM1Q01101 510 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 C10orf62Q5T681 223 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM164Q5U3C3 297 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 SLX4IPQ5VYV7 408 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM65Q6PI78 240 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PAQR6Q6TCH4 344 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM64Q6YI46 380 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 LANCL3Q6ZV70 420 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CA13Q8N1Q1 262 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 FTMTQ8N4E7 242 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 OR2T35Q8NGX2 323 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ZFAND1Q8TCF1 268 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TBC1D20Q96BZ9 403 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF501Q96CX3 271 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 YIPF6Q96EC8 236 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 RNFT2Q96EX2 444 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 DGAT2Q96PD7 388 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PRRX2Q99811 253 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 NRSN2Q9GZP1 204 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 MYNNQ9NPC7 610 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PCDHB16Q9NRJ7 776 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CLEC2DQ9UHP7 191 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PTRH2Q9Y3E5 179 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 NBASA2RRP1 2371 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 MED12Q93074 2177 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 M0R082 166 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 UPK1AO00322 258 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ANKRD28O15084 1053 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PROM1O43490 865 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 MRPS14O60783 128 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TNFRSF17Q02223 184 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 NHLH1Q02575 133 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF155Q12901 538 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC14A1Q13336 389 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TGIF1Q15583 401 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 NKAIN1Q4KMZ8 207 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TRMT12Q53H54 448 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 SYT6Q5T7P8 510 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF767PQ75MW2 155 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 PRR22Q8IZ63 422 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 D2HGDHQ8N465 521 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 C16orf58Q96GQ5 468 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 LINC00052Q96N35 136 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CRB3Q9BUF7 120 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TMED9Q9BVK6 235 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 GLIPR2Q9H4G4 154 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 CXorf36Q9H7Y0 433 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 TMCC3Q9ULS5 477 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 ASB4Q9Y574 426 aa8.04□□□□□ -1.12
LIMCH1-209ENST00000509277 A0A1B0GX78 115 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 M0R233 179 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC30A4O14863 429 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 F10P00742 488 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 FABP3P05413 133 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 TCN2P20062 427 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 M6PRP20645 277 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 SDC2P34741 201 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 CTBP2P56545 445 aa8.03□□□□□ -1.12
LIMCH1-209ENST00000509277 TSPAN5P62079 268 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms