RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 HPNP05981 417 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 FABP1P07148 127 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GPR4P46093 362 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 EPHA4P54764 986 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 EMP2P54851 167 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GRB2P62993 217 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC7A9P82251 487 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 MOGAT2Q3SYC2 334 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ACOT7LQ6ZUV0 252 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 LGI3Q8N145 548 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF611Q8N823 705 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC24A4Q8NFF2 622 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 M1APQ8TC57 530 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 IMP4Q96G21 291 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CMTM3Q96MX0 182 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 HIF1ANQ9NWT6 349 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 EHFQ9NZC4 300 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 MYEF2Q9P2K5 600 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 GCAP28676 217 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SOX3P41225 446 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ATP1B3P54709 279 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CDK5Q00535 292 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ACOT6Q3I5F7 207 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 EXOSC6Q5RKV6 272 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 FBXL22Q6P050 247 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 B3GNT8Q7Z7M8 397 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 PPP1R3BQ86XI6 285 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 OR4N5Q8IXE1 308 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 MKXQ8IYA7 352 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CCDC116Q8IYX3 515 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 CERS5Q8N5B7 392 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 SAMD8Q96LT4 415 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 NPY6RQ99463 290 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 ARHGDIGQ99819 225 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 FRMPD1Q5SYB0 1578 aa10.57□□□□□ -0.72
LIMCH1-208ENST00000508501 TRBV23OR9-2A0A075B6M9 112 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 TRDV1A0A1B0GX56 115 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 TMEM212A6NML5 194 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 PFKMP08237 780 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CHRNB4P30926 498 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CSKP41240 450 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 IL34Q6ZMJ4 242 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF620Q6ZNG0 422 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC38A6Q8IZM9 456 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 BPIFCQ8NFQ6 507 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 OR8U1Q8NH10 309 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 RAB7BQ96AH8 199 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 BCO2Q9BYV7 579 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 BCO1Q9HAY6 547 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 USP36Q9P275 1121 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CPA4Q9UI42 421 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 MOKQ9UQ07 419 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 BCORL1Q5H9F3 1711 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 LGALS8O00214 317 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 PTAFRP25105 342 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CTSOP43234 321 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 TEKQ02763 1124 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 ECH1Q13011 328 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 PDGFRLQ15198 375 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 SF3B4Q15427 424 aaKnown RBP eCLIP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 AAK1Q2M2I8 961 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 FUT10Q6P4F1 479 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 RNF111Q6ZNA4 994 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CBLL1Q75N03 491 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 RNF113BQ8IZP6 322 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CDRT4Q8N9R6 151 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 LINC00116Q8NCU8 138 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 KCNG3Q8TAE7 436 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF596Q8TC21 504 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 LPPQ93052 612 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 NKX3-1Q99801 234 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 NRIP3Q9NQ35 241 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 FBXO8Q9NRD0 319 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 RHBDD3Q9Y3P4 386 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 OR1A2Q9Y585 309 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 HECW2Q9P2P5 1572 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 E5RGE8 158 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 ASGR2P07307 311 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 THBS1P07996 1170 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 H2AFB1P0C5Y9 115 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 EBPQ15125 230 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CLEC20AQ6ZU45 233 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 FAM217AQ8IXS0 508 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 KRTCAP2Q8N6L1 136 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 FGFBP2Q9BYJ0 223 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 PSAT1Q9Y617 370 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 DCDC2BA2VCK2 349 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 GPR25O00155 361 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 TXNDC12O95881 172 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 DPP4P27487 766 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 PLCXD2Q0VAA5 305 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 KCTD11Q693B1 232 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 CDH26Q8IXH8 852 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 C11orf54Q9H0W9 315 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 PLEKHA2Q9HB19 425 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC2A4RGQ9NR83 387 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC7A7Q9UM01 511 aa10.56□□□□□ -0.72
LIMCH1-208ENST00000508501 MN1Q10571 1320 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-208ENST00000508501 ANKUB1A6NFN9 424 aa10.55□□□□□ -0.72
LIMCH1-208ENST00000508501 ATP1B1P05026 303 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms