RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 RNF223E7ERA6 249 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 SMAD9O15198 467 aaKnown RBP19.56■□□□□ 0.72
HDDC3-203ENST00000494993 CYTIPO60759 359 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 H6PDO95479 791 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 IDUAP35475 653 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 RPS26P62854 115 aaKnown RBP19.56■□□□□ 0.72
HDDC3-203ENST00000494993 GPR68Q15743 365 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 TIGD2Q4W5G0 525 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 TUBGCP3Q96CW5 907 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 OR5B2Q96R09 309 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 ZNF300Q96RE9 604 aaPredicted RBP19.56■□□□□ 0.72
HDDC3-203ENST00000494993 LAT2Q9GZY6 243 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 SERHL2Q9H4I8 314 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 HEATR1Q9H583 2144 aaKnown RBP19.56■□□□□ 0.72
HDDC3-203ENST00000494993 LIPT1Q9Y234 373 aa19.56■□□□□ 0.72
HDDC3-203ENST00000494993 COL6A5A8TX70 2615 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 ATRQ13535 2644 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 DNAJA2O60884 412 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 LYZL6O75951 148 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 AK1P00568 194 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 G6PDP11413 515 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 MATN1P21941 496 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 EDNRAP25101 427 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 C21orf58P58505 322 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 SKP2Q13309 424 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 STK11Q15831 433 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 ZNF141Q15928 474 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 PGGHGQ32M88 737 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 DNAJC14Q6Y2X3 702 aaPredicted RBP19.55■□□□□ 0.72
HDDC3-203ENST00000494993 MAPK1IP1LQ8NDC0 245 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 ST8SIA1Q92185 356 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 THUMPD3Q9BV44 507 aaKnown RBP19.55■□□□□ 0.72
HDDC3-203ENST00000494993 TRIM2Q9C040 744 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 QRSL1Q9H0R6 528 aaKnown RBP19.55■□□□□ 0.72
HDDC3-203ENST00000494993 LGALS13Q9UHV8 139 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 KCNE5Q9UJ90 142 aa19.55■□□□□ 0.72
HDDC3-203ENST00000494993 ALPK2Q86TB3 2170 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 CENPVL1A0A0U1RR11 272 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 DUXAA6NLW8 204 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 ZNF724A8MTY0 619 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 C9JVG2 144 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 CRLF1O75462 422 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 STX11O75558 287 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 CYP7B1O75881 506 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 FESP07332 822 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 DMTNQ08495 405 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 MAD2L1Q13257 205 aaPredicted RBP19.54■□□□□ 0.72
HDDC3-203ENST00000494993 PPA1Q15181 289 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 C6orf120Q7Z4R8 191 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 CLECL1Q8IZS7 167 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 ZNF75CPQ92670 426 aaPredicted RBP19.54■□□□□ 0.72
HDDC3-203ENST00000494993 ZNF775Q96BV0 537 aaPredicted RBP19.54■□□□□ 0.72
HDDC3-203ENST00000494993 SLC35G5Q96KT7 338 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 REG4Q9BYZ8 158 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 SLCO5A1Q9H2Y9 848 aa19.54■□□□□ 0.72
HDDC3-203ENST00000494993 RNF103-CHMP3A0A140T963 221 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 FCMRO60667 390 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 UGT2B17O75795 530 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 CSTAP01040 98 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 THBS1P07996 1170 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 NUDT17P0C025 328 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 COX5AP20674 150 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 ACVR1BP36896 505 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 CLDN8P56748 225 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 SESN3P58005 492 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 FAPQ12884 760 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 PGS1Q32NB8 556 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 ARHGAP11BQ3KRB8 267 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 HEPHL1Q6MZM0 1159 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 OLIG3Q7RTU3 272 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.53■□□□□ 0.72
HDDC3-203ENST00000494993 CLEC4FQ8N1N0 589 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 TMEM234Q8WY98 164 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 TRAF4Q9BUZ4 470 aaPredicted RBP19.53■□□□□ 0.72
HDDC3-203ENST00000494993 ZNF350Q9GZX5 532 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 SERINC1Q9NRX5 453 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 ASIC5Q9NY37 505 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 MKLN1Q9UL63 735 aa19.53■□□□□ 0.72
HDDC3-203ENST00000494993 YLPM1P49750 1951 aaKnown RBP19.52■□□□□ 0.72
HDDC3-203ENST00000494993 IGHV4-39P01824 125 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 BPGMP07738 259 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 UBTFL6P0CB48 400 aaPredicted RBP19.52■□□□□ 0.72
HDDC3-203ENST00000494993 PGCP20142 388 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 IGHV1-2P23083 117 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 DIO1P49895 249 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 EMX2Q04743 252 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 MERTKQ12866 999 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 SYT14P1Q58G82 188 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 TIMM23BQ5SRD1 257 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 ABLIM2Q6H8Q1 611 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 OR4F3Q6IEY1 312 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 TMPPEQ6ZT21 453 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 SSX8Q7RTT4 187 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 GALNT5Q7Z7M9 940 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 MUCL1Q96DR8 90 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 ALG2Q9H553 416 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 ACER3Q9NUN7 267 aa19.52■□□□□ 0.72
HDDC3-203ENST00000494993 CISD1Q9NZ45 108 aaKnown RBP19.52■□□□□ 0.72
HDDC3-203ENST00000494993 NOP53Q9NZM5 478 aaKnown RBP19.52■□□□□ 0.72
HDDC3-203ENST00000494993 SHISA9B4DS77 424 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms