RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CLDND1Q9NY35 253 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 TRAV27A0A087WT01 109 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 DUXAA6NLW8 204 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 A8MUA0 341 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SMIM10L1P0DMW3 83 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 PTHLHP12272 177 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 NOS3P29474 1203 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 TLX1P31314 330 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 OR3A3P47888 321 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 ARPC4P59998 168 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 RRAS2P62070 204 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 MBOAT2Q6ZWT7 520 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 KLHL36Q8N4N3 616 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 C17orf47Q8NEP4 570 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SUN5Q8TC36 379 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC22A18Q96BI1 424 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SMIM10Q96HG1 83 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 C1QTNF6Q9BXI9 259 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 S1PR5Q9H228 398 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 PHF11Q9UIL8 331 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 KDM4EB2RXH2 506 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 PRKNO60260 465 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 CRYZL1O95825 349 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 PAICSP22234 425 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 FPR3P25089 353 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 NDUFS1P28331 727 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 FXYD6P3P58550 94 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 EEF1A1P68104 462 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 KIR2DS3Q14952 304 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 NNATQ16517 81 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 DECR1Q16698 335 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 GXYLT1Q4G148 440 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 AADACL4Q5VUY2 407 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 RERGQ96A58 199 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 RIPOR3Q96MK2 946 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 PRSS27Q9BQR3 290 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 ZNF559Q9BR84 538 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 PILRAQ9UKJ1 303 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 MGAT4AQ9UM21 535 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 ASCC3Q8N3C0 2202 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 RDH16O75452 317 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 ENPP1P22413 925 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 GABRA3P34903 492 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 ARHGAP11BQ3KRB8 267 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC25A30Q5SVS4 291 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 PRAMEF8Q5VWM4 474 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 PRAMEF7Q5VXH5 474 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 SERPINA12Q8IW75 414 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 ABHD1Q96SE0 405 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 CDCA3Q99618 268 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 THAP7Q9BT49 309 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 FAM60AQ9NP50 221 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 FGF20Q9NP95 211 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 IL20Q9NYY1 176 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 CPNE7Q9UBL6 633 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 CBLCQ9ULV8 474 aa15.29■□□□□ 0.04
CCDC88B-210ENST00000494566 ORC5O43913 435 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 MT-ND4P03905 459 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 SNRPBP14678 240 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 DSG2Q14126 1118 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR1Q1Q15612 314 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 CXXC5Q7LFL8 322 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR4N2Q8NGD1 307 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC37A2Q8TED4 501 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 RSC1A1Q92681 617 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OMA1Q96E52 524 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 PTCHD1Q96NR3 888 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 ALG8Q9BVK2 526 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 GPR174Q9BXC1 333 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR52D1Q9H346 318 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 UBQLN3Q9H347 655 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 CACYBPQ9HB71 228 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 ANKRD61A6NGH8 418 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 HRKO00198 91 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 HRGP04196 525 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 HLA-DPB1P04440 258 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 GIFP27352 417 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 GRPRP30550 384 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 PLAURQ03405 335 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 ILF3Q12906 894 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 ERV3-1Q14264 604 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 EOGTQ5NDL2 527 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 THSD4Q6ZMP0 1018 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 ABHD13Q7L211 337 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 CEACAM19Q7Z692 300 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR2T33Q8NG76 320 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR11H4Q8NGC9 324 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR13C2Q8NGS9 318 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OR9A4Q8NGU2 314 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 OSTF1Q92882 214 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 DPCDQ9BVM2 203 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 MED28Q9H204 178 aa15.28■□□□□ 0.04
CCDC88B-210ENST00000494566 KLF4O43474 513 aa15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 NOS1APO75052 506 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 ERP29P30040 261 aaKnown RBP15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 OR12D2P58182 307 aa15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 MAB21L1Q13394 359 aa15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 FGFBP1Q14512 234 aa15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 ZNF322Q6U7Q0 402 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 USP53Q70EK8 1073 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms