RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ZNF346Q9UL40 294 aaKnown RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SLC7A11Q9UPY5 501 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 MEMO1Q9Y316 297 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 CAMSAP1Q5T5Y3 1602 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 KBTBD11-OT1A0A1B0GTJ5 212 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 A0A1W2PQD8 194 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 A0A1W2PR48 441 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 EVPLLA8MZ36 301 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 KPNA4O00629 521 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 PPP1R2P9O14990 202 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 NKX2-8O15522 239 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 GLSO94925 669 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TTC4O95801 387 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 GHRHP01286 108 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 JUNP05412 331 aaKnown RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 MYOGP15173 224 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 NELFEP18615 380 aaKnown RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 GABRR1P24046 479 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 LIPAP38571 399 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 DDOSTP39656 456 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 MAP2K4P45985 399 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 RPL5P46777 297 aaKnown RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 SERPINB10P48595 397 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ARL4DP49703 201 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 VEGFCP49767 419 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 KCNQ1P51787 676 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 PTTG1IPP53801 180 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 NAPAP54920 295 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 MTCP1P56278 107 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 NXPH1P58417 271 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 RAE1P78406 368 aaKnown RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 DLX2Q07687 328 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 SF3A2Q15428 464 aaKnown RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TRAM1Q15629 374 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 RNF151Q2KHN1 245 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 DCAF4L1Q3SXM0 396 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 LINC01620Q4KN68 170 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TIMM23BQ5SRD1 257 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 C9orf64Q5T6V5 341 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 SERTAD4-AS1Q5TG53 156 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 C9orf135Q5VTT2 229 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 LAIR1Q6GTX8 287 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 PRR5LQ6MZQ0 368 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 CAPN13Q6MZZ7 669 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TCTN3Q6NUS6 607 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TMPRSS11AQ6ZMR5 421 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 C20orf204Q6ZNR8 217 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 C19orf35Q6ZS72 473 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 AHSA2Q719I0 299 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 NET1Q7Z628 596 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TMEM173Q86WV6 379 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 STPG2Q8N412 459 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TERB1Q8NA31 727 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF738Q8NE65 137 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 REPS2Q8NFH8 660 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 OR10X1Q8NGY0 326 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 GGHQ92820 318 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 OTULINQ96BN8 352 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 C8orf44Q96CB5 159 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 C10orf35Q96D05 121 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 LGALS12Q96DT0 336 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF486Q96H40 463 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 MS4A10Q96PG2 267 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ERGIC2Q96RQ1 377 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 JMJD8Q96S16 334 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 CBWD1Q9BRT8 395 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TRAF4Q9BUZ4 470 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 HDHD5Q9BXW7 423 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 TKTL2Q9H0I9 626 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 MMP28Q9H239 520 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 BCAS3Q9H6U6 928 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 GPR35Q9HC97 309 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 SLC2A9Q9NRM0 540 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 LANCL2Q9NS86 450 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 NLE1Q9NVX2 485 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 SAE1Q9UBE0 346 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-220ENST00000492859 CLN8Q9UBY8 286 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 KIF25Q9UIL4 384 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 RAB26Q9ULW5 256 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 SH2B3Q9UQQ2 575 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 HS3ST3A1Q9Y663 406 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 CDH10Q9Y6N8 788 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ATP10DQ9P241 1426 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ZMYM6O95789 1325 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 AFF2P51816 1311 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 ATP10AO60312 1499 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 FGD5Q6ZNL6 1462 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 MYH15Q9Y2K3 1946 aa3.86□□□□□ -1.79
BRCA1-220ENST00000492859 A0A1B0GTI1 187 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 C1orf226A1L170 272 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FRG2CA6NGY1 282 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ADARB2-AS1A8MUL3 147 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ADM5C9JUS6 153 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NPIPB11E5RHQ5 1161 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NPIPB6E9PJ23 425 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CDC7O00311 574 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 BTN3A3O00478 584 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 BHLHE40O14503 412 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CDIPTO14735 213 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PSTPIP1O43586 416 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms