RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 WDFY2Q96P53 400 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 TGM7Q96PF1 710 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 SPRTNQ9H040 489 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 SYNDIG1Q9H7V2 258 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 MEPEQ9NQ76 525 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 HINT3Q9NQE9 182 aaKnown RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 CUTCQ9NTM9 273 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 ASB6Q9NWX5 421 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 GALNT8Q9NY28 637 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 LRIT1Q9P2V4 623 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 CRNNQ9UBG3 495 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 SSR3Q9UNL2 185 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 TRAPPC4Q9Y296 219 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 TMEM184BQ9Y519 407 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 USP24Q9UPU5 2620 aa9.89□□□□□ -0.83
USP4-214ENST00000491791 COL5A1P20908 1838 aaPredicted RBP9.89□□□□□ -0.83
USP4-214ENST00000491791 CEP192Q8TEP8 1941 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 CHD6Q8TD26 2715 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 NUP210LQ5VU65 1888 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 A0A087WUJ7 227 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 LOC100506127A0A0U1RQW1 187 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 TRDV1A0A1B0GX56 115 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 FRG2CA6NGY1 282 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 SLC22A31A6NKX4 558 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 HRKO00198 91 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 TO15178 435 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 DUX1O43812 170 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 PPM1BO75688 479 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 NTN1O95631 604 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 ONECUT2O95948 504 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 NGFRP08138 427 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 PEPDP12955 493 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 MAOBP27338 520 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 GABRA5P31644 462 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 RORAP35398 523 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 TGFBR1P36897 503 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 SLC1A3P43003 542 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 RNF144AP50876 292 aaPredicted RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 GPR143P51810 404 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 SLC37A1P57057 533 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 MAT1AQ00266 395 aaKnown RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 CFHR1Q03591 330 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 CDC20Q12834 499 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 FOXD4Q12950 439 aaPredicted RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 ELAVL1Q15717 326 aaKnown RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 PLA2G2CQ5R387 149 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 NIPAL3Q6P499 406 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 CXXC5Q7LFL8 322 aaKnown RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 KANSL1Q7Z3B3 1105 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 OR4N2Q8NGD1 307 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 FANK1Q8TC84 345 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 TM9SF4Q92544 642 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 MMABQ96EY8 250 aaPredicted RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 ASPNQ9BXN1 380 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 DPH1Q9BZG8 443 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 UBQLN4Q9NRR5 601 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 C20orf141Q9NUB4 165 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 UCKL1Q9NWZ5 548 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 KLHL3Q9UH77 587 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 DTX4Q9Y2E6 619 aa9.88□□□□□ -0.83
USP4-214ENST00000491791 CAB39Q9Y376 341 aaPredicted RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 GOLGA4Q13439 2230 aaKnown RBP9.88□□□□□ -0.83
USP4-214ENST00000491791 NPIPA5A0A0B4J1W7 369 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 TCRBV16S1A1N1A0A5B0 115 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 NPIPA7E9PJI5 369 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 LOC110117498-PIK3R3F6TDL0 507 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ARPC3O15145 178 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 AKAP8O43823 692 aaKnown RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 IDH3BO43837 385 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ADAM11O75078 769 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 RFPL3O75679 317 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 UPK1BO75841 260 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 OR2B3O76000 313 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ANKRD34CP0C6C1 535 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 NPIPA8P0DM63 369 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 BCKDHBP21953 392 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 SLC2A5P22732 501 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 SLC6A6P31641 620 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 S100A5P33763 92 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 RORCP51449 518 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 IFITM3Q01628 133 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ITGADQ13349 1161 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 SHBQ15464 509 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.87□□□□□ -0.83
USP4-214ENST00000491791 SOWAHCQ53LP3 525 aaPredicted RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 CLEC12AQ5QGZ9 265 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 PAQR6Q6TCH4 344 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 MEX3DQ86XN8 651 aaKnown RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 CPOQ8IVL8 374 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 KLHL36Q8N4N3 616 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 DEFB119Q8N690 84 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ACBD7Q8N6N7 88 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ARIH2OSQ8N7S6 290 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 DRAXINQ8NBI3 349 aaPredicted RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 PLPP5Q8NEB5 264 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 C17orf47Q8NEP4 570 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 PFN4Q8NHR9 129 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 PTP4A1Q93096 173 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 SLC25A46Q96AG3 418 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 SENP5Q96HI0 755 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms