RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	TMEM107	Q6UX40	140 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	HACD2	Q6Y1H2	254 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC35D2	Q76EJ3	337 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ADGRD2	Q7Z7M1	963 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SCD5	Q86SK9	330 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MEX3D	Q86XN8	651 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	KMT5C	Q86Y97	462 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	STH	Q8IWL8	128 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GABRG1	Q8N1C3	465 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CCDC185	Q8N715	623 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TMEM161B	Q8NDZ6	487 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	FAM83F	Q8NEG4	500 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	PROKR2	Q8NFJ6	384 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	OR14L1P	Q8NHC6	308 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RHEBL1	Q8TAI7	183 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RDH11	Q8TC12	318 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RAET1E	Q8TD07	263 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ASB9	Q96DX5	294 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF778	Q96MU6	729 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ZNF641	Q96N77	438 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MCEE	Q96PE7	176 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RASL10B	Q96S79	203 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SORT1	Q99523	831 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	OMD	Q99983	421 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MED10	Q9BTT4	135 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TRMO	Q9BU70	441 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	WRAP53	Q9BUR4	548 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	C20orf24	Q9BUV8	137 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	IFT27	Q9BW83	186 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	POTEKP	Q9BYX7	375 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	TRIM15	Q9C019	465 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	OR2B2	Q9GZK3	357 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	C20orf27	Q9GZN8	174 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	UPF3A	Q9H1J1	476 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	LHX5	Q9H2C1	402 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	KCNN2	Q9H2S1	579 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	ELOVL6	Q9H5J4	265 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RPF2	Q9H7B2	306 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GPN2	Q9H9Y4	310 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	WDR41	Q9HAD4	459 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CXorf21	Q9HAI6	301 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC28A3	Q9HAS3	691 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	BPIFA1	Q9NP55	256 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	DYRK4	Q9NR20	520 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	THSD1	Q9NS62	852 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	GPR173	Q9NS66	373 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	MS4A12	Q9NXJ0	267 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	CLEC5A	Q9NY25	188 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	NARF	Q9UHQ1	456 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RBMX2	Q9Y388	322 aa	Known RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	RAP2C	Q9Y3L5	183 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	KLF2	Q9Y5W3	355 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	STYXL1	Q9Y6J8	313 aa		4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	COL5A3	P25940	1745 aa	Predicted RBP	4.35	□□□□□ -1.71
RTN4-215	ENST00000491592	KIR2DS5	A0A0G2JLQ3	304 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	TCRBV3S1	A0A5B6	114 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	TMEM89	A2RUT3	159 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	CPED1	A4D0V7	1026 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	FAM90A10P	A6NDY2	464 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	DNAJC9-AS1	A6NH13	148 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	FBLL1	A6NHQ2	334 aa	Known RBP	4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	SNTN	A6NMZ2	147 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	ARHGEF33	A8MVX0	844 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592		H0YIG0	161 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592		H3BMQ9	156 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	KIR2DS3	K7RE56	304 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	IFNL4	K9M1U5	179 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC22A1	O15245	554 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	KCNN4	O15554	427 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	AQP9	O43315	295 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	GATC	O43716	136 aa	Known RBP	4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	UGT1A9	O60656	530 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	CREG1	O75629	220 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	HLA-DQA2	P01906	255 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	HSMCR30	P0CW71	290 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	CEACAM1	P13688	526 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	GSTM3	P21266	225 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	UGT1A4	P22310	534 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	OR1D2	P34982	312 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	UGT1A3	P35503	534 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	UGT1A5	P35504	534 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	GSS	P48637	474 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	SLC9A3	P48764	834 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	CXCR3	P49682	368 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	ERF	P50548	548 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	NDST2	P52849	883 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	MTCP1	P56278	107 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	HNRNPK	P61978	463 aa	Known RBP eCLIP	4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	RPL10A	P62906	217 aa	Known RBP	4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	REEP5	Q00765	189 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.34	□□□□□ -1.71	4e-8	■■■□□ 14.6
RTN4-215	ENST00000491592	ITPK1	Q13572	414 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	CEACAM7	Q14002	265 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	NR1D2	Q14995	579 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	SPCS2	Q15005	226 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	TAF13	Q15543	124 aa		4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	TRIP6	Q15654	476 aa	Known RBP	4.34	□□□□□ -1.71
RTN4-215	ENST00000491592	PNLIPRP3	Q17RR3	467 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 57 ms