RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PINX1Q96BK5 328 aaKnown RBP1.43□□□□□ -2.18
SMC4-220ENST00000488017 VPS35Q96QK1 796 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 CYP2S1Q96SQ9 504 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 RNF126Q9BV68 326 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 SLC17A9Q9BYT1 436 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 NARFLQ9H6Q4 476 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 ECT2Q9H8V3 914 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 CALHM2Q9HA72 323 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 NANSQ9NR45 359 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 RDH8Q9NYR8 311 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 CRLS1Q9UJA2 301 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 ANAPC7Q9UJX3 599 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 ZNF225Q9UK10 706 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 RNF6Q9Y252 685 aa1.43□□□□□ -2.18
SMC4-220ENST00000488017 LOC100131303A0A0U1RQF7 123 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 A0A1B0GUL7 405 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 PSMB11A5LHX3 300 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 NKX2-6A6NCS4 301 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 OR6C65A6NJZ3 312 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ZNF705EA8MWA4 302 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 F8WDY8 70 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 K7N7A8 449 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 NBR2O15453 112 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 TRAF3IP2O43734 574 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 JAK2O60674 1132 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 NPIPB7O75200 414 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 F10P00742 488 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CSF2P04141 144 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 IGF1P05019 195 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ARF4P18085 180 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 AQP1P29972 269 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CCND2P30279 289 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 HPDP32754 393 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 RPS10P46783 165 aaKnown RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 CSNK1DP48730 415 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 BDH1Q02338 343 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 PAX5Q02548 391 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 PDZK1IP1Q13113 114 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 LAGE3Q14657 143 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 NDUFA9Q16795 377 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ZNF311Q5JNZ3 666 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ACSM5Q6NUN0 579 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 WDR74Q6RFH5 385 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 CBLN3Q6UW01 205 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CENPUQ71F23 418 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ANKRD37Q7Z713 158 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 LINC01551Q86U37 167 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 LCA5Q86VQ0 697 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 GRAMD2AQ8IUY3 354 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 TMEM252Q8N6L7 170 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 MDS2Q8NDY4 140 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 OR5AU1Q8NGC0 362 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 NANPQ8TBE9 248 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 OR1E3Q8WZA6 343 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 RDH5Q92781 318 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 SDSLQ96GA7 329 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CELF6Q96J87 481 aaKnown RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 MS4A14Q96JA4 679 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 FAM210BQ96KR6 192 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 FEM1AQ9BSK4 669 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 FICDQ9BVA6 458 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 MRPL13Q9BYD1 178 aaKnown RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 GSDMCQ9BYG8 508 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CHIAQ9BZP6 476 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 PPDPFQ9H3Y8 114 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 RWDD1Q9H446 243 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 MRPL39Q9NYK5 338 aaKnown RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 ACTR3BQ9P1U1 418 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CYTH4Q9UIA0 394 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ANGPTL2Q9UKU9 493 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 UBQLN1Q9UMX0 589 aaKnown RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 B9D1Q9UPM9 204 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 PRG3Q9Y2Y8 225 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 MAB21L2Q9Y586 359 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 CARMIL1Q5VZK9 1371 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 COL5A1P20908 1838 aaPredicted RBP1.42□□□□□ -2.18
SMC4-220ENST00000488017 RLFQ13129 1914 aa1.42□□□□□ -2.18
SMC4-220ENST00000488017 ATP8B3O60423 1300 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.41□□□□□ -2.18
SMC4-220ENST00000488017 ZNF264O43296 627 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 UFL1O94874 794 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 DIRAS3O95661 229 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 INSP01308 110 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 MMP1P03956 469 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 OPN1LWP04000 364 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 CLUP10909 449 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 PDHBP11177 359 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 SERPINA2P20848 420 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 PRDX3P30048 256 aaKnown RBP1.41□□□□□ -2.18
SMC4-220ENST00000488017 EPHX2P34913 555 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 NAPAP54920 295 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 APOC4P55056 127 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 BPIFB3P59826 476 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 EWSR1Q01844 656 aaKnown RBP eCLIP1.41□□□□□ -2.18
SMC4-220ENST00000488017 CUL1Q13616 776 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 MOBPQ13875 183 aa1.41□□□□□ -2.18
SMC4-220ENST00000488017 ATXN7L3Q14CW9 347 aaPredicted RBP1.41□□□□□ -2.18
SMC4-220ENST00000488017 INAQ16352 499 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms