RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 DOK1Q99704 481 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 CCDC90BQ9GZT6 254 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ADAM19Q9H013 955 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ZNF700Q9H0M5 742 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 LIN28AQ9H9Z2 209 aaKnown RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 C12orf10Q9HB07 376 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 AMBNQ9NP70 447 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ACOT13Q9NPJ3 140 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 SIGLEC7Q9Y286 467 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 PCDHGA3Q9Y5H0 932 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 TRBV11-1A0A0K0K1C0 115 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 TEX51A0A1B0GUA7 166 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 C4orf47A7E2U8 309 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ZNF99A8MXY4 864 aaPredicted RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 TLX2O43763 284 aaPredicted RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 LRP3O75074 770 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 RCBTB2O95199 551 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 DLGAP3O95886 979 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 DCKP27707 260 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 NUDT6P53370 316 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 FHL1Q13642 323 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 LYPD8Q6UX82 237 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ATG4DQ86TL0 474 aaPredicted RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 MARCH3Q86UD3 253 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ZNF420Q8TAQ5 688 aaPredicted RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 TMEM163Q8TC26 289 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 RNF217Q8TC41 542 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 HGDQ93099 445 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 ZNF524Q96C55 264 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 SAMD8Q96LT4 415 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 PHOX2BQ99453 314 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 SLC19A3Q9BZV2 496 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 IRF2BPLQ9H1B7 796 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 OR52D1Q9H346 318 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 CXorf56Q9H5V9 222 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 HHATLQ9HCP6 504 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 MED17Q9NVC6 651 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 SELENONQ9NZV5 590 aa12.85□□□□□ -0.35
CLK3-204ENST00000483723 RSL24D1Q9UHA3 163 aaKnown RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 PTRH2Q9Y3E5 179 aaKnown RBP12.85□□□□□ -0.35
CLK3-204ENST00000483723 IGHV1-45A0A0A0MS14 117 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 NDUFB5O43674 189 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 STK17BO94768 372 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 INMTO95050 263 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 MT-CO3P00414 261 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 IGHEP01854 428 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 HMGN1P05114 100 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 PNMTP11086 282 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 TGM1P22735 817 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 MAP2K4P45985 399 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 ZNF117Q03924 483 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 SNAPC1Q16533 368 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 PGGHGQ32M88 737 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 C16orf47Q6ZP98 133 aaPredicted RBP12.84□□□□□ -0.35
CLK3-204ENST00000483723 NUP54Q7Z3B4 507 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 GLRX5Q86SX6 157 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 PIP4P1Q86T03 277 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 CLVS1Q8IUQ0 354 aaPredicted RBP12.84□□□□□ -0.35
CLK3-204ENST00000483723 SLC43A2Q8N370 569 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 SLC38A2Q96QD8 506 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 TMEM43Q9BTV4 400 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 CDCA4Q9BXL8 241 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 PRRG3Q9BZD7 231 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 UBQLN3Q9H347 655 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 ZBTB20Q9HC78 741 aaPredicted RBP12.84□□□□□ -0.35
CLK3-204ENST00000483723 PARD6AQ9NPB6 346 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 TBC1D23Q9NUY8 699 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 MRPS18AQ9NVS2 196 aaKnown RBP12.84□□□□□ -0.35
CLK3-204ENST00000483723 GPR83Q9NYM4 423 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 PADI1Q9ULC6 663 aa12.84□□□□□ -0.35
CLK3-204ENST00000483723 RPL36Q9Y3U8 105 aaKnown RBP12.84□□□□□ -0.35
CLK3-204ENST00000483723 GPR179Q6PRD1 2367 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 IGKV1D-42A0A075B6H8 117 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 EFCAB9A8MZ26 197 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 SURF4O15260 269 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 CSO75390 466 aaKnown RBP12.83□□□□□ -0.36
CLK3-204ENST00000483723 DKK1O94907 266 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 STSP08842 583 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 RAB40ALP0C0E4 278 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 PTNP21246 168 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 MST1P26927 711 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 C21orf33P30042 268 aaPredicted RBP12.83□□□□□ -0.36
CLK3-204ENST00000483723 EVI2BP34910 448 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 GRK5P34947 590 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 GP2P55259 537 aaKnown RBP12.83□□□□□ -0.36
CLK3-204ENST00000483723 ST3GAL4Q11206 333 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 TCF15Q12870 199 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 TBCEQ15813 527 aaPredicted RBP12.83□□□□□ -0.36
CLK3-204ENST00000483723 SYT14P1Q58G82 188 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 UBE2UQ5VVX9 321 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 TIPARPQ7Z3E1 657 aaKnown RBP12.83□□□□□ -0.36
CLK3-204ENST00000483723 SLC15A4Q8N697 577 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 OR2T33Q8NG76 320 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 OR5W2Q8NH69 310 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 LIPHQ8WWY8 451 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 TTC9Q92623 222 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 RORBQ92753 470 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 ZNF582Q96NG8 517 aaPredicted RBP12.83□□□□□ -0.36
CLK3-204ENST00000483723 KLHDC3Q9BQ90 382 aa12.83□□□□□ -0.36
CLK3-204ENST00000483723 TBL1XR1Q9BZK7 514 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms