RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NID1P14543 1247 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 SIRPAP78324 504 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 MERTKQ12866 999 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 SELENBP1Q13228 472 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 GNA13Q14344 377 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 FBXL19-AS1Q494R0 122 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 MRPL2Q5T653 305 aaKnown RBP13.98□□□□□ -0.17
HMGA1-206ENST00000478214 VRK2Q86Y07 508 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 CMIPQ8IY22 773 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 PEX5LQ8IYB4 626 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 CNEP1R1Q8N9A8 125 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 OR52P1PQ8NH57 321 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 ZNF563Q8TA94 476 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 TMEM234Q8WY98 164 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 OSTF1Q92882 214 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 RNASE6Q93091 150 aaKnown RBP13.98□□□□□ -0.17
HMGA1-206ENST00000478214 PRRG4Q9BZD6 226 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 A4GALTQ9NPC4 353 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 RLIMQ9NVW2 624 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 PAQR5Q9NXK6 330 aaPredicted RBP13.98□□□□□ -0.17
HMGA1-206ENST00000478214 JKAMPQ9P055 326 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 HCFC1P51610 2035 aa13.98□□□□□ -0.17
HMGA1-206ENST00000478214 HEATR5AQ86XA9 2040 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 A0A0G2JPF8 293 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 HNRNPCL2B2RXH8 293 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 HNRNPCL3B7ZW38 293 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 AP3D1O14617 1153 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 ANGPT2O15123 496 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 HNRNPCL1O60812 293 aaKnown RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 SYNGR4O95473 234 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 HNRNPCL4P0DMR1 293 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 PPIBP23284 216 aaKnown RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 KIR2DL2P43627 348 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 CARD18P57730 90 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 PDSS1Q5T2R2 415 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 GCNT6Q5T4J0 391 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 VWA1Q6PCB0 445 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 ZNF836Q6ZNA1 936 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 PLEKHM3Q6ZWE6 761 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 GDF7Q7Z4P5 450 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 DHDDSQ86SQ9 333 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 LUZP2Q86TE4 346 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 DPP10Q8N608 796 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 TSPEARQ8WU66 669 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 STARD4Q96DR4 205 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 LRRC46Q96FV0 321 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 ZNF317Q96PQ6 595 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 CPPED1Q9BRF8 314 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 SRXN1Q9BYN0 137 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 COQ10BQ9H8M1 238 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 PACSIN3Q9UKS6 424 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 MCTS1Q9ULC4 181 aaKnown RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 CLEC4AQ9UMR7 237 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 ZNF443Q9Y2A4 671 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-206ENST00000478214 GMEB1Q9Y692 573 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 APCP25054 2843 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 MED12LQ86YW9 2145 aa13.97□□□□□ -0.17
HMGA1-206ENST00000478214 A0A1W2PNR3 127 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 GJE1A6NN92 205 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 EVPLLA8MZ36 301 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 C5orf58C9J3I9 102 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 ARAFP10398 606 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 FCGR2AP12318 317 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 IDH2P48735 452 aaKnown RBP13.96□□□□□ -0.17
HMGA1-206ENST00000478214 EEF1A1P68104 462 aaKnown RBP13.96□□□□□ -0.17
HMGA1-206ENST00000478214 KLF10Q13118 480 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 LIN52Q52LA3 116 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 RUNDC3AQ59EK9 446 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 EEF1A1P5Q5VTE0 462 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 PRAMEF8Q5VWM4 474 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 PRAMEF7Q5VXH5 474 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 BTLAQ7Z6A9 289 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 LSRQ86X29 649 aaPredicted RBP13.96□□□□□ -0.17
HMGA1-206ENST00000478214 NFKBIDQ8NI38 313 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 ROBO4Q8WZ75 1007 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 CCDC106Q9BWC9 280 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 RBM24Q9BX46 236 aaKnown RBP13.96□□□□□ -0.17
HMGA1-206ENST00000478214 PIGMQ9H3S5 423 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 BCL2L10Q9HD36 194 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 SAR1AQ9NR31 198 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 CTPS2Q9NRF8 586 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 KLHL14Q9P2G3 628 aa13.96□□□□□ -0.17
HMGA1-206ENST00000478214 ANKHD1Q8IWZ3 2542 aaKnown RBP13.95□□□□□ -0.18
HMGA1-206ENST00000478214 CDHR4A6H8M9 788 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 CFAP73A6NFT4 308 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 A8MXE2 369 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 SMNDC1O75940 238 aaKnown RBP eCLIP13.95□□□□□ -0.18
HMGA1-206ENST00000478214 PGM3O95394 542 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 THBS1P07996 1170 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 GKN3PP0CG01 181 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 GPX2P18283 190 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 SLC7A1P30825 629 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 CPA2P48052 419 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 EPS8Q12929 822 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 NFYCQ13952 458 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 SELPLGQ14242 412 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 LARS2Q15031 903 aaKnown RBP13.95□□□□□ -0.18
HMGA1-206ENST00000478214 GUSBP1Q15486 140 aa13.95□□□□□ -0.18
HMGA1-206ENST00000478214 ZNF239Q16600 458 aaKnown RBP13.95□□□□□ -0.18
HMGA1-206ENST00000478214 C3orf33Q6P1S2 294 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms