RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	RPP40	O75818	363 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	C22orf31	O95567	290 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ZNF682	O95780	498 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PEX11B	O96011	259 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SOD1	P00441	154 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MB	P02144	154 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ALDOB	P05062	364 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	UROD	P06132	367 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	FH	P07954	510 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PFKM	P08237	780 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SRPRA	P08240	638 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ATXN1L	P0C7T5	689 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MTHFD2	P13995	350 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PAX1	P15863	534 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	HIST1H1B	P16401	226 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RCC1	P18754	421 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	EN2	P19622	333 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CXCL2	P19875	107 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PSMB1	P20618	241 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	BMP5	P22003	454 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ITGA3	P26006	1051 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SSTR2	P30874	369 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	S100A3	P33764	101 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MAS1L	P35410	378 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	FAU	P35544	74 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ARL2	P36404	184 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	KCNJ3	P48549	501 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CCR9	P51686	369 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	XK	P51811	444 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CRISP1	P54107	249 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CLDN8	P56748	225 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	WDR5	P61964	334 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SNRPE	P62304	92 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RAB1A	P62820	205 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SELENOW	P63302	87 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	NAAA	Q02083	359 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TLE2	Q04725	743 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CRYZ	Q08257	329 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ITK	Q08881	620 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TMEM115	Q12893	351 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CTBP1	Q13363	440 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CDH18	Q13634	790 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PCBP2	Q15366	365 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SEC23B	Q15437	767 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TOMM34	Q15785	309 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CSRP2	Q16527	193 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ST3GAL2	Q16842	350 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CDO1	Q16878	200 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	FAM182A	Q5T1J6	154 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SPOUT1	Q5T280	376 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	HIST2H3PS2	Q5TEC6	136 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	FAM46C	Q5VWP2	391 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ZNF660	Q6AZW8	331 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PTRHD1	Q6GMV3	140 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SLC30A6	Q6NXT4	461 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	LPCAT3	Q6P1A2	487 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ATRAID	Q6UW56	229 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CASP12	Q6UXS9	341 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	NPSR1	Q6W5P4	371 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SLC16A13	Q7RTY0	426 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	DPPA2	Q7Z7J5	298 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	PUSL1	Q8N0Z8	303 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TRAM1L1	Q8N609	369 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RASGEF1A	Q8N9B8	481 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	L3MBTL4	Q8NA19	623 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MFSD9	Q8NBP5	474 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ACVR1C	Q8NER5	493 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	DBF4B	Q8NFT6	615 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR2L5	Q8NG80	312 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR5B17	Q8NGF7	314 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR4C15	Q8NGM1	316 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR13C3	Q8NGS6	347 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR52P1P	Q8NH57	321 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RXFP4	Q8TDU9	374 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SLC35F5	Q8WV83	523 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TRAPPC12	Q8WVT3	735 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	DNAJB3	Q8WWF6	145 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CNOT9	Q92600	299 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	MRPS31	Q92665	395 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RFK	Q969G6	155 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TMEM203	Q969S6	136 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	C3orf49	Q96BT1	292 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	SMARCD1	Q96GM5	515 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RBM18	Q96H35	190 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	C14orf144	Q96I85	54 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TEX37	Q96LM6	180 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	OR52E6	Q96RD3	313 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	FEV	Q99581	238 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CDCA3	Q99618	268 aa	Predicted RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	CMSS1	Q9BQ75	279 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	RHNO1	Q9BSD3	238 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	DUSP26	Q9BV47	211 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TRIM62	Q9BVG3	475 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	FAIM2	Q9BWQ8	316 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	TEX12	Q9BXU0	123 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	POLDIP3	Q9BY77	421 aa	Known RBP	4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	DUSP16	Q9BY84	665 aa		4.37	□□□□□ -1.71
PTCD3-212	ENST00000477520	ARL6	Q9H0F7	186 aa		4.37	□□□□□ -1.71

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