RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 HEATR5AQ86XA9 2040 aa12.77□□□□□ -0.37
VAMP4-203ENST00000474047 A0A1W2PNV4 684 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 NID1P14543 1247 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 CTBP2P56545 445 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 LIN52Q52LA3 116 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 RPS26P11Q5JNZ5 115 aaPredicted RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 TMEM19Q96HH6 336 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 TREX2Q9BQ50 279 aaPredicted RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF559Q9BR84 538 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 RBM24Q9BX46 236 aaKnown RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 EXOSC3Q9NQT5 275 aaKnown RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 ACER3Q9NUN7 267 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 SLC25A37Q9NYZ2 338 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 VAPAQ9P0L0 249 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 SPIN1Q9Y657 262 aaPredicted RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 CENPEQ02224 2701 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 EFNA2O43921 213 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 PABPC4LP0CB38 370 aaKnown RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 TFPIP10646 304 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 PRF1P14222 555 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 KIR2DL3P43628 341 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 IDH2P48735 452 aaKnown RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 DLX5P56178 289 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 SNTB1Q13884 538 aaKnown RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 NFYCQ13952 458 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 SLC25A53Q5H9E4 307 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 GCNT6Q5T4J0 391 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 MRPL2Q5T653 305 aaKnown RBP12.76□□□□□ -0.37
VAMP4-203ENST00000474047 C3orf33Q6P1S2 294 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 DHDDSQ86SQ9 333 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 VRK2Q86Y07 508 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF440Q8IYI8 595 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 FAM71CQ8NEG0 241 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 TSPEARQ8WU66 669 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 MAL2Q969L2 176 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 TRIM8Q9BZR9 551 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 CCDC134Q9H6E4 229 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 RNF122Q9H9V4 155 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 A4GALTQ9NPC4 353 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 SLC52A3Q9NQ40 469 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 IFT52Q9Y366 437 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 EMC9Q9Y3B6 208 aa12.76□□□□□ -0.37
VAMP4-203ENST00000474047 CFAP73A6NFT4 308 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 AQP8O94778 261 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 NUDT7P0C024 238 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 IGFBP2P18065 325 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 SHC1P29353 583 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 CPOXP36551 454 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 APOBEC1P41238 236 aaKnown RBP12.75□□□□□ -0.37
VAMP4-203ENST00000474047 TLE4Q04727 773 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 ZSWIM7Q19AV6 140 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 CTU2Q2VPK5 515 aaKnown RBP12.75□□□□□ -0.37
VAMP4-203ENST00000474047 FBXL19-AS1Q494R0 122 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 MMEL1Q495T6 779 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 PLEKHM3Q6ZWE6 761 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 BBS10Q8TAM1 723 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 CPNE4Q96A23 557 aaPredicted RBP12.75□□□□□ -0.37
VAMP4-203ENST00000474047 ADGRG7Q96K78 797 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 OR5B2Q96R09 309 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF385DQ9H6B1 395 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 DNAJB12Q9NXW2 375 aaKnown RBP12.75□□□□□ -0.37
VAMP4-203ENST00000474047 KCNN3Q9UGI6 736 aa12.75□□□□□ -0.37
VAMP4-203ENST00000474047 A0A1W2PNR3 127 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 DNAJA2O60884 412 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 BCAS1O75363 584 aaPredicted RBP12.74□□□□□ -0.37
VAMP4-203ENST00000474047 TNFSF13O75888 250 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 NTN1O95631 604 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 CD1EP15812 388 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 CCNA2P20248 432 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 RPS4Y1P22090 263 aaKnown RBP12.74□□□□□ -0.37
VAMP4-203ENST00000474047 HTR3AP46098 478 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 KCNJ5P48544 419 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 COPZ1P61923 177 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 MAPK11Q15759 364 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF311Q5JNZ3 666 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 PRAMEF8Q5VWM4 474 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 PRAMEF7Q5VXH5 474 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 VWA1Q6PCB0 445 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF836Q6ZNA1 936 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 GRINAQ7Z429 371 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 KRT73Q86Y46 540 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 MSRB3Q8IXL7 192 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF295-AS1Q8N0V1 137 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 NFKBIDQ8NI38 313 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 SLC25A43Q8WUT9 341 aaPredicted RBP12.74□□□□□ -0.37
VAMP4-203ENST00000474047 ROBO4Q8WZ75 1007 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF524Q96C55 264 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 C14orf79Q96F83 325 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 GLRX2Q9NS18 164 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 RLIMQ9NVW2 624 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 JKAMPQ9P055 326 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 KLHL14Q9P2G3 628 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 CLEC4AQ9UMR7 237 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 PROCRQ9UNN8 238 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 ZNF443Q9Y2A4 671 aaPredicted RBP12.74□□□□□ -0.37
VAMP4-203ENST00000474047 TUBAL3A6NHL2 446 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 MSTNO14793 375 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 THBS1P07996 1170 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 BMP2P12643 396 aa12.74□□□□□ -0.37
VAMP4-203ENST00000474047 HOXB9P17482 250 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms