RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 GPR137CQ8N3F9 429 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 MRGPRX2Q96LB1 330 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 MTMR11A4FU01 709 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 GIPP09681 153 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RAB28P51157 221 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 FAM160A2Q8N612 972 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 IL17RDQ8NFM7 739 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 CHRDL1Q9BU40 450 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 NMNAT1Q9HAN9 279 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 SLC16A6O15403 523 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 HLA-DOBP13765 273 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 TNFSF8P32971 234 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 PSMB3P49720 205 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 PLCXD2Q0VAA5 305 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 GRB7Q14451 532 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 LEG1Q6P5S2 330 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ANKRD9Q96BM1 317 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 LIN7BQ9HAP6 207 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 A0A0U1RQK1 487 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 PPP5D1E7EU14 171 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 K7EQM0 130 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 MBP02144 154 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 SNRNP70P08621 437 aaKnown RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RAB7AP51149 207 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 TEKQ02763 1124 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 YIF1BQ5BJH7 314 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ARL14EPQ8N8R7 260 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 OR8J2Q8NGG1 315 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 HRH4Q9H3N8 390 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 CUTCQ9NTM9 273 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ACAD8Q9UKU7 415 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RNF24Q9Y225 148 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 B3GALT1Q9Y5Z6 326 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 CCDC85CA6NKD9 419 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 POLR2CP19387 275 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 AGTR2P50052 363 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 PER3P56645 1201 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 OR4D2P58180 307 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 SH3BP2P78314 561 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 FOXK1P85037 733 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 SYT6Q5T7P8 510 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 COL13A1Q5TAT6 717 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 KREMEN2Q8NCW0 462 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RHCGQ9UBD6 479 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ZMAT5Q9UDW3 170 aaKnown RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 POMT1Q9Y6A1 747 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 DOCK2Q92608 1830 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 A0A087WZY1 265 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 CD1EP15812 388 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 DTYMKP23919 212 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 CLDN10P78369 228 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ELOCQ15369 112 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 IGDCC3Q8IVU1 814 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF321PQ8N8H1 164 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RAB8BQ92930 207 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 TMEM19Q96HH6 336 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 AMDHD1Q96NU7 426 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 STRADBQ9C0K7 418 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RASD1Q9Y272 281 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 ASAH1Q13510 395 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 SCAMP5Q8TAC9 235 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 METTL17Q9H7H0 456 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-209ENST00000472056 hCG_1807616A0A1W2PRN6 198 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 TGFBR3Q03167 851 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 POU4F3Q15319 338 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 SLC12A9Q9BXP2 914 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 NKX6-2Q9C056 277 aaPredicted RBP12.52□□□□□ -0.4
COL6A3-209ENST00000472056 PHLPP1O60346 1717 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 LOC102723532A0A0G2JNH3 316 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 CXADRP78310 365 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF439Q8NDP4 499 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 HPSE2Q8WWQ2 592 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 ESAMQ96AP7 390 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 RPL10LQ96L21 214 aaKnown RBP12.52□□□□□ -0.4
COL6A3-209ENST00000472056 PCDHAC2Q9Y5I4 1007 aa12.52□□□□□ -0.4
COL6A3-209ENST00000472056 HSPB2A8KAH6 182 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 G3V2L1 256 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 CR2P20023 1033 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 P2RY14Q15391 338 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 HSPB2Q16082 182 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 TIGD5Q53EQ6 642 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 MEPCEQ7L2J0 689 aaKnown RBP12.52□□□□□ -0.41
COL6A3-209ENST00000472056 STT3BQ8TCJ2 826 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 DUSP19Q8WTR2 217 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 IL21RQ9HBE5 538 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 POLR2AP24928 1970 aaKnown RBP12.52□□□□□ -0.41
COL6A3-209ENST00000472056 TMEM225BP0DP42 221 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 GDF5P43026 501 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 DLX2Q07687 328 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-209ENST00000472056 COMMD6Q7Z4G1 85 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 DZANK1Q9NVP4 752 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 TMEM98Q9Y2Y6 226 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 FAM96BQ9Y3D0 163 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-209ENST00000472056 Q6ZNX1 250 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 CORO2AQ92828 525 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 RSPRY1Q96DX4 576 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 KLRG1Q96E93 195 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 GCM1Q9NP62 436 aa12.52□□□□□ -0.41
COL6A3-209ENST00000472056 NDRG3Q9UGV2 375 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms