RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 UQCRC2P22695 453 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 SLC1A6P48664 564 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 PTH2RP49190 550 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 TIGD2Q4W5G0 525 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 SFRP5Q5T4F7 317 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 Q71RC1 249 aaPredicted RBP14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 EIF3MQ7L2H7 374 aaKnown RBP14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 LRRC34Q8IZ02 419 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 VPS37AQ8NEZ2 397 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 TMEM171Q8WVE6 324 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 OIT3Q8WWZ8 545 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 TMEM234Q8WY98 164 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 TESCQ96BS2 214 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 SORT1Q99523 831 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 PSD2Q9BQI7 771 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 BCO1Q9HAY6 547 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 KLHL9Q9P2J3 617 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 HAO1Q9UJM8 370 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 CSPG4Q6UVK1 2322 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 FREM1Q5H8C1 2179 aa14.73□□□□□ -0.05
CCDC28B-204ENST00000469003 IGHV3-15A0A0B4J1V0 119 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ANKRD28O15084 1053 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 KIAA0513O60268 411 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 CYP7B1O75881 506 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 CPSF4O95639 269 aaKnown RBP14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ADAP00813 363 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 LBPP18428 481 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 PGCP20142 388 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 IL32P24001 234 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 SESN3P58005 492 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 PHC1P78364 1004 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 P2RY6Q15077 328 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 DPY19L1Q2PZI1 675 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ATAD3BQ5T9A4 648 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 AP1ARQ63HQ0 302 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 OLIG3Q7RTU3 272 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ANKRD46Q86W74 232 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 CIARTQ8N365 385 aaPredicted RBP14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ZNF611Q8N823 705 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 XAGE5Q8WWM1 108 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 USB1Q9BQ65 265 aaKnown RBP14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 QRSL1Q9H0R6 528 aaKnown RBP14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 POLE3Q9NRF9 147 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 SERINC1Q9NRX5 453 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ACER3Q9NUN7 267 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 ING1Q9UK53 422 aaPredicted RBP14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 PRR14LQ5THK1 2151 aa14.72□□□□□ -0.05
CCDC28B-204ENST00000469003 SMAD9O15198 467 aaKnown RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 CYTIPO60759 359 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 H6PDO95479 791 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 UBTFL6P0CB48 400 aaPredicted RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 OR12D1P0DN82 309 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 BGNP21810 368 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 CLNS1AP54105 237 aaKnown RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 CASP9P55211 416 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 RASGEF1BQ0VAM2 473 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 STX3Q13277 289 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 CASP8Q14790 479 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 TSC22D1Q15714 1073 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 MAPK14Q16539 360 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 TNFAIP8L3Q5GJ75 292 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 SPANXN4Q5MJ08 99 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 SAXO2Q658L1 398 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 TYW3Q6IPR3 259 aaKnown RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 TNFAIP8L2Q6P589 184 aaPredicted RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 FAM71CQ8NEG0 241 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 HSD17B8Q92506 261 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 RAB8BQ92930 207 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 KISS1RQ969F8 398 aaPredicted RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 OR5B2Q96R09 309 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 PARD6BQ9BYG5 372 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 NUF2Q9BZD4 464 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 SAP130Q9H0E3 1048 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 CXorf56Q9H5V9 222 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 NGBQ9NPG2 151 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 ZNF701Q9NV72 531 aaPredicted RBP14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 SLC35A3Q9Y2D2 325 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 WDR45Q9Y484 360 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 ROS1P08922 2347 aa14.71□□□□□ -0.05
CCDC28B-204ENST00000469003 ZNF724A8MTY0 619 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF814B7Z6K7 855 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 LY6G6DO95868 133 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 PGM1P36871 562 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 OR3A2P47893 321 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 KHKP50053 298 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 FUT5Q11128 374 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 MERTKQ12866 999 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 ITGADQ13349 1161 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 MPP2Q14168 576 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 TAB1Q15750 504 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 NCMAPQ5T1S8 102 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 OGFOD2Q6N063 350 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 ALKBH2Q6NS38 261 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 ADAM5Q6NVV9 412 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 FRRS1Q6ZNA5 592 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 TMPPEQ6ZT21 453 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 Q6ZT83 130 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF619Q8N2I2 560 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 RAB3IL1Q8TBN0 382 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 SLC25A43Q8WUT9 341 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms