RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PANX1Q96RD7 426 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 THUMPD3Q9BV44 507 aaKnown RBP12.44□□□□□ -0.42
USP4-206ENST00000461553 OR10A4Q9H209 315 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 GP6Q9HCN6 339 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 SERINC1Q9NRX5 453 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 THAP1Q9NVV9 213 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 NKIRAS1Q9NYS0 192 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 KLHL9Q9P2J3 617 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 KCNE5Q9UJ90 142 aa12.44□□□□□ -0.42
USP4-206ENST00000461553 NAV3Q8IVL0 2385 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 A0A1W2PNR3 127 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 HDAC3O15379 428 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 EFNA2O43921 213 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 SMPD2O60906 423 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 PRKD3O94806 890 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 PGRP06401 933 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 GUSBP08236 651 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 NID1P14543 1247 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 PSMB1P20618 241 aaKnown RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 WDR4P57081 412 aaKnown RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 RAC3P60763 192 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 UFM1P61960 85 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 PHC1P78364 1004 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 TXNL4AP83876 142 aaKnown RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 LRRC74AQ0VAA2 488 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 FUT5Q11128 374 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 MERTKQ12866 999 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 TFAP2EQ6VUC0 442 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 FRRS1Q6ZNA5 592 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 WFDC8Q8IUA0 241 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 TUSC5Q8IXB3 177 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 FAM71CQ8NEG0 241 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 WFDC11Q8NEX6 87 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 ZNF563Q8TA94 476 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 RAB3IL1Q8TBN0 382 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 SLC25A43Q8WUT9 341 aaPredicted RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 MARK4Q96L34 752 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 HS3ST6Q96QI5 342 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 OR5B2Q96R09 309 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 QRSL1Q9H0R6 528 aaKnown RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 GPR52Q9Y2T5 361 aa12.43□□□□□ -0.42
USP4-206ENST00000461553 SPIN1Q9Y657 262 aaPredicted RBP12.43□□□□□ -0.42
USP4-206ENST00000461553 IGHV3-15A0A0B4J1V0 119 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 GOLGA8QA0A0J9YX86 632 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 GOLGA8OA6NCC3 632 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 C9JVG2 144 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 GOLGA8NF8WBI6 632 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 SLCO1B7G3V0H7 640 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 ARHGEF9O43307 516 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 DNAJA2O60884 412 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 SNNO75324 88 aaPredicted RBP12.42□□□□□ -0.42
USP4-206ENST00000461553 H6PDO95479 791 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 THBDP07204 575 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 KITP10721 976 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 ENPP1P22413 925 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 IL32P24001 234 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 EPHA3P29320 983 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 PGM1P36871 562 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 SESN3P58005 492 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 CSNK2A1P68400 391 aaPredicted RBP12.42□□□□□ -0.42
USP4-206ENST00000461553 NKX6-1P78426 367 aaPredicted RBP12.42□□□□□ -0.42
USP4-206ENST00000461553 ACKR1Q16570 336 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 SYT14P1Q58G82 188 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 Q5PR19 223 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 SHEQ5VZ18 495 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 NXNQ6DKJ4 435 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 PLEKHM3Q6ZWE6 761 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 CXorf67Q86X51 503 aaPredicted RBP12.42□□□□□ -0.42
USP4-206ENST00000461553 RNF130Q86XS8 419 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 P3H2Q8IVL5 708 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 STEAP2Q8NFT2 490 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 TEX37Q96LM6 180 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 OR52E6Q96RD3 313 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 PIP5K1AQ99755 562 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.42□□□□□ -0.42
USP4-206ENST00000461553 CADP27708 2225 aa12.42□□□□□ -0.42
USP4-206ENST00000461553 USF3Q68DE3 2245 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 NSD1Q96L73 2696 aaPredicted RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 CCDC154A6NI56 674 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 HMGN4O00479 90 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 YES1P07947 543 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 IDO1P14902 403 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 FOSL1P15407 271 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 HOXC12P31275 282 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 SLC18A1P54219 525 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 MAGOHP61326 146 aaKnown RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 MAPK14Q16539 360 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 DNAJC14Q6Y2X3 702 aaPredicted RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 ZNF704Q6ZNC4 412 aaPredicted RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 C22orf34Q6ZV56 151 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 NUFIP2Q7Z417 695 aaKnown RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 GRINAQ7Z429 371 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 GABRG1Q8N1C3 465 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 LRRC75A-AS1Q8N1F1 130 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 ARFGAP2Q8N6H7 521 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 GLB1L3Q8NCI6 653 aaPredicted RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 KISS1RQ969F8 398 aaPredicted RBP12.41□□□□□ -0.42
USP4-206ENST00000461553 S100PBPQ96BU1 408 aa12.41□□□□□ -0.42
USP4-206ENST00000461553 ZNF524Q96C55 264 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms