RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SLC6A13Q9NSD5 602 aa20.59■□□□□ 0.89
PTPN4-208ENST00000460289 THUMPD1Q9NXG2 353 aaKnown RBP20.59■□□□□ 0.89
PTPN4-208ENST00000460289 POLQO75417 2590 aa20.59■□□□□ 0.89
PTPN4-208ENST00000460289 AGAP5A6NIR3 686 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 SS18L1O75177 396 aaPredicted RBP20.58■□□□□ 0.89
PTPN4-208ENST00000460289 SHC1P29353 583 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 SLC7A1P30825 629 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 CRATP43155 626 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 KCNJ5P48544 419 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 SESN3P58005 492 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 ZNF474Q6S9Z5 364 aaPredicted RBP20.58■□□□□ 0.89
PTPN4-208ENST00000460289 ARFGAP2Q8N6H7 521 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 ZNF610Q8N9Z0 462 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 ZNF524Q96C55 264 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 GPATCH1Q9BRR8 931 aaKnown RBP20.58■□□□□ 0.89
PTPN4-208ENST00000460289 CLEC4MQ9H2X3 399 aaPredicted RBP20.58■□□□□ 0.89
PTPN4-208ENST00000460289 ACER3Q9NUN7 267 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 TMEM45AQ9NWC5 275 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 CALML5Q9NZT1 146 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 P2RX2Q9UBL9 471 aa20.58■□□□□ 0.89
PTPN4-208ENST00000460289 CASKO14936 926 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 CHRM4P08173 479 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 MVDP53602 400 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 FAM27E3Q08E93 113 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 RNPS1Q15287 305 aaKnown RBP20.57■□□□□ 0.88
PTPN4-208ENST00000460289 ZNF239Q16600 458 aaKnown RBP20.57■□□□□ 0.88
PTPN4-208ENST00000460289 C3orf33Q6P1S2 294 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 ZNF563Q8TA94 476 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 GTF2H4Q92759 462 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 QRSL1Q9H0R6 528 aaKnown RBP20.57■□□□□ 0.88
PTPN4-208ENST00000460289 CSMD2Q7Z408 3487 aa20.57■□□□□ 0.88
PTPN4-208ENST00000460289 SH3D21A4FU49 640 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 TMEM247A6NEH6 219 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 SASH3O75995 380 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 DBIP07108 87 aaKnown RBP20.56■□□□□ 0.88
PTPN4-208ENST00000460289 POU2F1P14859 743 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 IL7RP16871 459 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 RYKP34925 604 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 APOBEC1P41238 236 aaKnown RBP20.56■□□□□ 0.88
PTPN4-208ENST00000460289 RAC3P60763 192 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 MERTKQ12866 999 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 FBXW10Q5XX13 1052 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 BLOC1S3Q6QNY0 202 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 HMGN2P46Q86SG4 172 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 ROBO4Q8WZ75 1007 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 RAD21L1Q9H4I0 556 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 FANCFQ9NPI8 374 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 ITGB1BP2Q9UKP3 347 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 CLEC4AQ9UMR7 237 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 EDARQ9UNE0 448 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 PCDHB14Q9Y5E9 798 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 MPDZO75970 2070 aa20.56■□□□□ 0.88
PTPN4-208ENST00000460289 ETFAP13804 333 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 FKBP2P26885 142 aaKnown RBP20.55■□□□□ 0.88
PTPN4-208ENST00000460289 CRISP3P54108 245 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 DSTNP60981 165 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 SLC2A7Q6PXP3 512 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 PLEKHM3Q6ZWE6 761 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 FCRLAQ7L513 359 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 PEX5LQ8IYB4 626 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 RNF128Q8TEB7 428 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 SLC25A43Q8WUT9 341 aaPredicted RBP20.55■□□□□ 0.88
PTPN4-208ENST00000460289 WDR60Q8WVS4 1066 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 STON2Q8WXE9 905 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 SRXN1Q9BYN0 137 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 COQ10BQ9H8M1 238 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 GP6Q9HCN6 339 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 CCDC167Q9P0B6 97 aa20.55■□□□□ 0.88
PTPN4-208ENST00000460289 SPIN1Q9Y657 262 aaPredicted RBP20.55■□□□□ 0.88
PTPN4-208ENST00000460289 HEATR5AQ86XA9 2040 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 CLDN24A6NM45 220 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 C16orf97H3BN30 126 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 BCAS1O75363 584 aaPredicted RBP20.54■□□□□ 0.88
PTPN4-208ENST00000460289 PRKD3O94806 890 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 TFPTP0C1Z6 253 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 NID1P14543 1247 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 RPS4Y1P22090 263 aaKnown RBP20.54■□□□□ 0.88
PTPN4-208ENST00000460289 UGT2B10P36537 528 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 ATP4BP51164 291 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 GTDC1Q4AE62 458 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 TMEM201Q5SNT2 666 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 GRINAQ7Z429 371 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 STK32CQ86UX6 486 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 CDC20BQ86Y33 519 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 FUNDC1Q8IVP5 155 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 SLC43A2Q8N370 569 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 CNOT9Q92600 299 aaKnown RBP20.54■□□□□ 0.88
PTPN4-208ENST00000460289 SPDL1Q96EA4 605 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 AURKBQ96GD4 344 aaPredicted RBP20.54■□□□□ 0.88
PTPN4-208ENST00000460289 PAIP1Q9H074 479 aaKnown RBP20.54■□□□□ 0.88
PTPN4-208ENST00000460289 RABEP2Q9H5N1 569 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 PRDM4Q9UKN5 801 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 OTOGQ6ZRI0 2925 aa20.54■□□□□ 0.88
PTPN4-208ENST00000460289 ANKRD17O75179 2603 aaKnown RBP20.53■□□□□ 0.88
PTPN4-208ENST00000460289 A0A096LPI6 279 aa20.53■□□□□ 0.88
PTPN4-208ENST00000460289 CLIC1O00299 241 aa20.53■□□□□ 0.88
PTPN4-208ENST00000460289 UQCRBP14927 111 aa20.53■□□□□ 0.88
PTPN4-208ENST00000460289 HTR3AP46098 478 aa20.53■□□□□ 0.88
PTPN4-208ENST00000460289 IDH2P48735 452 aaKnown RBP20.53■□□□□ 0.88
PTPN4-208ENST00000460289 SQLEQ14534 574 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms