RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 MSANTD3Q96H12 275 aa13.78□□□□□ -0.2
PTPRU-205ENST00000460170 ACER3Q9NUN7 267 aa13.78□□□□□ -0.2
PTPRU-205ENST00000460170 ABRACLQ9P1F3 81 aa13.78□□□□□ -0.2
PTPRU-205ENST00000460170 A3GALT2U3KPV4 340 aa13.78□□□□□ -0.2
PTPRU-205ENST00000460170 V9GY05 133 aa13.78□□□□□ -0.2
PTPRU-205ENST00000460170 DOCK1Q14185 1865 aa13.78□□□□□ -0.2
PTPRU-205ENST00000460170 METTL15A6NJ78 407 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 VNN2O95498 520 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 PRKXP51817 358 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 FGFBP1Q14512 234 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 UBE2UQ5VVX9 321 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 METAP1DQ6UB28 335 aaPredicted RBP13.77□□□□□ -0.2
PTPRU-205ENST00000460170 LAS2Q8IYD9 372 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 HOXB13Q92826 284 aaPredicted RBP13.77□□□□□ -0.2
PTPRU-205ENST00000460170 RLIMQ9NVW2 624 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 SLC6A5Q9Y345 797 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 PKLRP30613 574 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 IRS1P35568 1242 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 PBX2P40425 430 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 CTBP2P56545 445 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 SNRPGP62308 76 aaKnown RBP13.77□□□□□ -0.2
PTPRU-205ENST00000460170 FGL1Q08830 312 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 EIF2B1Q14232 305 aaKnown RBP13.77□□□□□ -0.2
PTPRU-205ENST00000460170 ZNF750Q32MQ0 723 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 FAM76BQ5HYJ3 339 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 NXNL2Q5VZ03 156 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 B3GLCTQ6Y288 498 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 OLIG3Q7RTU3 272 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 SERPINA12Q8IW75 414 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 UEVLDQ8IX04 471 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 C7orf50Q9BRJ6 194 aaKnown RBP13.77□□□□□ -0.2
PTPRU-205ENST00000460170 GABARAPL1Q9H0R8 117 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 OR51J1Q9H342 316 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 DUSP21Q9H596 190 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 MED20Q9H944 212 aa13.77□□□□□ -0.2
PTPRU-205ENST00000460170 SCN1AP35498 2009 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 RAD1O60671 282 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 CSO75390 466 aaKnown RBP13.77□□□□□ -0.21
PTPRU-205ENST00000460170 SCGNO76038 276 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ZNF43P17038 809 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 DPTQ07507 201 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 AIMP2Q13155 320 aaKnown RBP13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ERV3-1Q14264 604 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ANKRD34AQ69YU3 496 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ZNF595Q8IYB9 648 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 SHROOM3Q8TF72 1996 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 DCDC2BA2VCK2 349 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 A6NIZ1 184 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 H3BNC9 293 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 PRAF2O60831 178 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 CXCL10P02778 98 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 RAP1BP61224 184 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 RAP1AP62834 184 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 TATDN3Q17R31 274 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 GXYLT1Q4G148 440 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 AGAP7PQ5VUJ5 663 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 PRAMEF8Q5VWM4 474 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 PRAMEF7Q5VXH5 474 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ZNF704Q6ZNC4 412 aaPredicted RBP13.77□□□□□ -0.21
PTPRU-205ENST00000460170 BCDIN3DQ7Z5W3 292 aaKnown RBP13.77□□□□□ -0.21
PTPRU-205ENST00000460170 SLC7A13Q8TCU3 470 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 KCTD12Q96CX2 325 aaKnown RBP13.77□□□□□ -0.21
PTPRU-205ENST00000460170 NEDD4LQ96PU5 975 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 HHIPQ96QV1 700 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ANKRD19PQ9H560 264 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 INIPQ9NRY2 104 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 CD207Q9UJ71 328 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 SLC7A11Q9UPY5 501 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 LRIT2A6NDA9 550 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 SYT7O43581 403 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 MMP11P24347 488 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 PLP2Q04941 152 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 CBFBQ13951 182 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 COL28A1Q2UY09 1125 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 ELMOD2Q8IZ81 293 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 RLN3Q8WXF3 142 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 TAS2R3Q9NYW6 316 aa13.77□□□□□ -0.21
PTPRU-205ENST00000460170 COL5A3P25940 1745 aaPredicted RBP13.77□□□□□ -0.21
PTPRU-205ENST00000460170 GPRIN2O60269 458 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 SFTPBP07988 381 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 FPR3P25089 353 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 PXNP49023 591 aaPredicted RBP13.76□□□□□ -0.21
PTPRU-205ENST00000460170 GP2P55259 537 aaKnown RBP13.76□□□□□ -0.21
PTPRU-205ENST00000460170 ZNF385BQ569K4 471 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 FAM69AQ5T7M9 428 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 LHX8Q68G74 356 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 OR52I1Q8NGK6 324 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 OBP2AQ9NY56 170 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 HSPA12AO43301 675 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 HBQ1P09105 142 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 PRR35P0CG20 571 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 CCDC58Q4VC31 144 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 GPR139Q6DWJ6 353 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 MFSD12Q6NUT3 480 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 RBM45Q8IUH3 476 aaKnown RBP13.76□□□□□ -0.21
PTPRU-205ENST00000460170 SLC16A11Q8NCK7 471 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 SGPP1Q9BX95 441 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 ZNF700Q9H0M5 742 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 H3BML4 177 aa13.76□□□□□ -0.21
PTPRU-205ENST00000460170 IL33O95760 270 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms