RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DPY19L2P2Q6ZN68 376 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 C15orf39Q6ZRI6 1047 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 QSOX2Q6ZRP7 698 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ASB18Q6ZVZ8 466 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ARCQ7LC44 396 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNMB4Q86W47 210 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ANGPTL5Q86XS5 388 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DCUN1D3Q8IWE4 304 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF100Q8IYN0 542 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RDH10Q8IZV5 341 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 APCDD1Q8J025 514 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM156Q8N614 296 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TC2NQ8N9U0 490 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 UXS1Q8NBZ7 420 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DMBX1Q8NFW5 382 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 KBTBD8Q8NFY9 601 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 OR4K15Q8NH41 348 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DAZLQ92904 295 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ASB9Q96DX5 294 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RNF170Q96K19 258 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CNBD2Q96M20 576 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 GLT1D1Q96MS3 346 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM209Q96SK2 561 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 OMDQ99983 421 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CCDC3Q9BQI4 270 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 C1orf50Q9BV19 199 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TM6SF2Q9BZW4 377 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TM6SF1Q9BZW5 370 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 UCK2Q9BZX2 261 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ROPN1BQ9BZX4 212 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ING2Q9H160 280 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC32A1Q9H598 525 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 WDR54Q9H977 334 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 OR2S2Q9NQN1 319 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RLIMQ9NVW2 624 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SLCO3A1Q9UIG8 710 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SSR3Q9UNL2 185 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC7A11Q9UPY5 501 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CLIC4Q9Y696 253 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 COL4A4P53420 1690 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MYO1GB0I1T2 1018 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MKRN2OSH3BPM6 223 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 B4GALT5O43286 388 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PSTPIP1O43586 416 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RAMP3O60896 148 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PMPCBO75439 489 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TNFAIP8O95379 198 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PSMG1O95456 288 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 FGGP02679 453 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF23P17027 643 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF30P17039 623 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ITGA3P26006 1051 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MARK3P27448 753 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC6A1P30531 599 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 S100A11P31949 105 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MTNR1AP48039 350 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ACOT2P49753 483 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 BLKP51451 505 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DNAJB13P59910 316 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ABCE1P61221 599 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 FGL1Q08830 312 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 BIKQ13323 160 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF846Q147U1 533 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ASPRV1Q53RT3 343 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM41BQ5BJD5 291 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SYT6Q5T7P8 510 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TTC23Q5W5X9 447 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF836Q6ZNA1 936 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ABHD13Q7L211 337 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ERASQ7Z444 233 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ABI3BPQ7Z7G0 1075 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM132CQ8N3T6 1108 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MARVELD2Q8N4S9 558 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 C11orf44Q8N8P7 122 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CLEC1AQ8NC01 280 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 FAM98AQ8NCA5 519 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 OR52B4Q8NGK2 314 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SOCS4Q8WXH5 440 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RAB40AQ8WXH6 277 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 EXTL1Q92935 676 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SCAMP4Q969E2 229 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 WDFY2Q96P53 400 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ALOXE3Q9BYJ1 711 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SPATC1LQ9H0A9 340 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PORCNQ9H237 461 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PLA2G3Q9NZ20 509 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 KLHL21Q9UJP4 597 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 STUB1Q9UNE7 303 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CTNND2Q9UQB3 1225 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PEX16Q9Y5Y5 336 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CIB4A0PJX0 185 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 CCDC182A6NF36 153 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 OR2W5A6NFC9 320 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 OOEPA6NGQ2 149 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 AQP7P3A6NL99 342 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 CDRT15L2A8MXV6 281 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 M0QXV9 152 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ANKRD28O15084 1053 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SIGLEC5O15389 551 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 TGOLN2O43493 480 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms