RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TRNT1Q96Q11 434 aaKnown RBP17.3■□□□□ 0.36
USP40-207ENST00000450940 ZBTB18Q99592 522 aa17.3■□□□□ 0.36
USP40-207ENST00000450940 SDR39U1Q9NRG7 319 aaPredicted RBP17.3■□□□□ 0.36
USP40-207ENST00000450940 ACER3Q9NUN7 267 aa17.3■□□□□ 0.36
USP40-207ENST00000450940 LIPT1Q9Y234 373 aa17.3■□□□□ 0.36
USP40-207ENST00000450940 C9JVG2 144 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 SLC22A3O75751 556 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 IL6P05231 212 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 UBTFL6P0CB48 400 aaPredicted RBP17.29■□□□□ 0.36
USP40-207ENST00000450940 PPP3CBP16298 524 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 MAGEA8P43361 318 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 CCR4P51679 360 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 SESN3P58005 492 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 GSTA3Q16772 222 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 SLC9B1Q4ZJI4 515 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 C3orf33Q6P1S2 294 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 FCRLAQ7L513 359 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 RNF130Q86XS8 419 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 TGIF2LYQ8IUE0 185 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 SLC43A2Q8N370 569 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 ABHD3Q8WU67 409 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 TMEM234Q8WY98 164 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 PMM1Q92871 262 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 TMUB1Q9BVT8 246 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 OR10A4Q9H209 315 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 FANCFQ9NPI8 374 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 EXOSC3Q9NQT5 275 aaKnown RBP17.29■□□□□ 0.36
USP40-207ENST00000450940 C6orf203Q9P0P8 240 aaPredicted RBP17.29■□□□□ 0.36
USP40-207ENST00000450940 KLHL13Q9P2N7 655 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 MTORP42345 2549 aa17.29■□□□□ 0.36
USP40-207ENST00000450940 RAI1Q7Z5J4 1906 aaPredicted RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 BCAS1O75363 584 aaPredicted RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 PRKD3O94806 890 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 H6PDO95479 791 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 THBDP07204 575 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 CD53P19397 219 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 LOXP28300 417 aaPredicted RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 ANXA11P50995 505 aaKnown RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 KCNJ10P78508 379 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 PLAURQ03405 335 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 CHRNEQ04844 493 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 KEAP1Q14145 624 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 EXOC3L2Q2M3D2 409 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 DEFB113Q30KQ7 82 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 LRRC74BQ6ZQY2 392 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 ZNF621Q6ZSS3 439 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 PLEKHM3Q6ZWE6 761 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 ZNF550Q7Z398 422 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 STK32CQ86UX6 486 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 OR52B2Q96RD2 323 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 KLHL4Q9C0H6 718 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 QRSL1Q9H0R6 528 aaKnown RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 SLC38A1Q9H2H9 487 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 ZIM2Q9NZV7 527 aa17.28■□□□□ 0.36
USP40-207ENST00000450940 ING1Q9UK53 422 aaPredicted RBP17.28■□□□□ 0.36
USP40-207ENST00000450940 SETD2Q9BYW2 2564 aaPredicted RBP17.27■□□□□ 0.36
USP40-207ENST00000450940 AGAP5A6NIR3 686 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 CYP7B1O75881 506 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 YES1P07947 543 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 ZCCHC18P0CG32 403 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 PSMB1P20618 241 aaKnown RBP17.27■□□□□ 0.36
USP40-207ENST00000450940 ENPP1P22413 925 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 SLC7A1P30825 629 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 APOBEC1P41238 236 aaKnown RBP17.27■□□□□ 0.36
USP40-207ENST00000450940 MVDP53602 400 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 SYPL1Q16563 259 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 GPAT3Q53EU6 434 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 TMEM201Q5SNT2 666 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 NXNQ6DKJ4 435 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 MSANTD1Q6ZTZ1 278 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 TUSC5Q8IXB3 177 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 CMIPQ8IY22 773 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 ANKFN1Q8N957 763 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 ATP6V1C2Q8NEY4 427 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 TACO1Q9BSH4 297 aaKnown RBP17.27■□□□□ 0.36
USP40-207ENST00000450940 CCDC106Q9BWC9 280 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 MTHFD2LQ9H903 347 aaPredicted RBP17.27■□□□□ 0.36
USP40-207ENST00000450940 BCO1Q9HAY6 547 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 SERINC1Q9NRX5 453 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 SLC6A13Q9NSD5 602 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 GPR52Q9Y2T5 361 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 PRR14LQ5THK1 2151 aa17.27■□□□□ 0.36
USP40-207ENST00000450940 ZNF469Q96JG9 3925 aaPredicted RBP17.26■□□□□ 0.35
USP40-207ENST00000450940 UQCRHLA0A096LP55 91 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 A0A1W2PNR3 127 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 RFXANKO14593 260 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 KRT75O95678 551 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 GSNP06396 782 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 CHRM4P08173 479 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 RPS4Y1P22090 263 aaKnown RBP17.26■□□□□ 0.35
USP40-207ENST00000450940 MERTKQ12866 999 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 MAPK11Q15759 364 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 COX20Q5RI15 118 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 ANKRD34AQ69YU3 496 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 EPGNQ6UW88 154 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 TFAP2EQ6VUC0 442 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 NUFIP2Q7Z417 695 aaKnown RBP17.26■□□□□ 0.35
USP40-207ENST00000450940 GABRG1Q8N1C3 465 aa17.26■□□□□ 0.35
USP40-207ENST00000450940 SLC25A43Q8WUT9 341 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms