RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ACTR3P61158 418 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 MERTKQ12866 999 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 CCNIQ14094 377 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 OR1Q1Q15612 314 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 CMPK2Q5EBM0 449 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 WIPI1Q5MNZ9 446 aaPredicted RBP14.3□□□□□ -0.12
USP40-206ENST00000443711 ENTPD8Q5MY95 495 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 PLEKHM3Q6ZWE6 761 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 GRINAQ7Z429 371 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 CYP4Z1Q86W10 505 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 SIAH3Q8IW03 269 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 ADGRG5Q8IZF4 528 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 GTPBP8Q8N3Z3 284 aaPredicted RBP14.3□□□□□ -0.12
USP40-206ENST00000443711 FAR1Q8WVX9 515 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 NR4A3Q92570 626 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 SNRNP40Q96DI7 357 aaKnown RBP14.3□□□□□ -0.12
USP40-206ENST00000443711 MRGPRX4Q96LA9 322 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 PIGQQ9BRB3 760 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 ADAM19Q9H013 955 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 LDAHQ9H6V9 325 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 EXO5Q9H790 373 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 SELENONQ9NZV5 590 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 NPIPA1Q9UND3 350 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 AURKCQ9UQB9 309 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 NTNG1Q9Y2I2 539 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 RPH3AQ9Y2J0 694 aaPredicted RBP14.3□□□□□ -0.12
USP40-206ENST00000443711 FAM32AQ9Y421 112 aaKnown RBP14.3□□□□□ -0.12
USP40-206ENST00000443711 ENPP4Q9Y6X5 453 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 IGSF10Q6WRI0 2623 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 NBEAQ8NFP9 2946 aa14.3□□□□□ -0.12
USP40-206ENST00000443711 KMT2BQ9UMN6 2715 aaPredicted RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 TRGV5A0A0B4J1U4 118 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 A0A1B0GWA3 101 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 CPSF4LA6NMK7 179 aaKnown RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 LINC01387J3KSC0 135 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 HCN1O60741 890 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 IGHG3P01860 377 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 FABP3P05413 133 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 RAP2AP10114 183 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 ZNF17P17021 662 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 MST1P26927 711 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 APOBEC1P41238 236 aaKnown RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 ERFP50548 548 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 VLDLRP98155 873 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 FOXF1Q12946 379 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 KPNB1Q14974 876 aaKnown RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 TMEM44Q2T9K0 475 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 KRTCAP3Q53RY4 240 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 RAET1LQ5VY80 246 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 ZNF324BQ6AW86 544 aaPredicted RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 ZNF613Q6PF04 617 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 ULK3Q6PHR2 472 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 ZDHHC21Q8IVQ6 265 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 POC1BQ8TC44 478 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 PHF10Q8WUB8 498 aaKnown RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 CANT1Q8WVQ1 401 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 DNAJA4Q8WW22 397 aaPredicted RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 ZNF524Q96C55 264 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 SFXN2Q96NB2 322 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 TSPAN10Q9H1Z9 355 aaPredicted RBP14.29□□□□□ -0.12
USP40-206ENST00000443711 SLC6A15Q9H2J7 730 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 IL1RAPQ9NPH3 570 aa14.29□□□□□ -0.12
USP40-206ENST00000443711 OR2M5A3KFT3 312 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 TRAPPC13A5PLN9 417 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 hCG_2039718K7EN88 272 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 SUSD5O60279 629 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 OR5F1O95221 314 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 SVILO95425 2214 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 NTN1O95631 604 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 RHCEP18577 417 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 CHMP24386 653 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 TACR3P29371 465 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 YAP1P46937 504 aaKnown RBP14.28□□□□□ -0.12
USP40-206ENST00000443711 POLR2HP52434 150 aaKnown RBP14.28□□□□□ -0.12
USP40-206ENST00000443711 B3GALT5-AS1P59052 145 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 TAS2R41P59536 307 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 FOXK1P85037 733 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 AAGABQ6PD74 315 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 TRILQ7L0X0 811 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 PIWIL3Q7Z3Z3 882 aaKnown RBP14.28□□□□□ -0.12
USP40-206ENST00000443711 OR5M1Q8NGP8 315 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 NEIL3Q8TAT5 605 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 ADAMTS16Q8TE57 1224 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 C3orf49Q96BT1 292 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 PRRC1Q96M27 445 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 ZNF300Q96RE9 604 aaPredicted RBP14.28□□□□□ -0.12
USP40-206ENST00000443711 ZNF347Q96SE7 839 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 DENND2DQ9H6A0 471 aaPredicted RBP14.28□□□□□ -0.12
USP40-206ENST00000443711 YY1AP1Q9H869 796 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 CTPS2Q9NRF8 586 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 SERINC1Q9NRX5 453 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 CCM2LQ9NUG4 571 aaPredicted RBP14.28□□□□□ -0.12
USP40-206ENST00000443711 ASF1BQ9NVP2 202 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 NDUFAF4Q9P032 175 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 STOML1Q9UBI4 398 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 RIMS3Q9UJD0 308 aa14.28□□□□□ -0.12
USP40-206ENST00000443711 COL6A6A6NMZ7 2263 aa14.27□□□□□ -0.12
USP40-206ENST00000443711 TMED7-TICAM2A0A0A6YYA0 188 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 A0A0B4J2E0 115 aa14.27□□□□□ -0.13
USP40-206ENST00000443711 A0A1B0GVC2 190 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms