RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 IL7RP16871 459 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CAPN3P20807 821 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 SHC1P29353 583 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 SLC7A1P30825 629 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 RYKP34925 604 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CPOXP36551 454 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 KIR2DL2P43627 348 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-201ENST00000437679 SLC6A8P48029 635 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 MVDP53602 400 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CRISP3P54108 245 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CTBP2P56545 445 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 MERTKQ12866 999 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 GTF2IRD2BQ6EKJ0 949 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 BTLAQ7Z6A9 289 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 GTF2IRD2Q86UP8 949 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 TMEM200AQ86VY9 491 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 FAM222BQ8WU58 562 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CPNE4Q96A23 557 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-201ENST00000437679 REXO5Q96IC2 774 aaKnown RBP13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CACYBPQ9HB71 228 aaKnown RBP13.62□□□□□ -0.23
LIMS3-201ENST00000437679 GLRX2Q9NS18 164 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 ACER3Q9NUN7 267 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 GALNT8Q9NY28 637 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CRIM1Q9NZV1 1036 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 EMC9Q9Y3B6 208 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 MYO9AB2RTY4 2548 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 POLQO75417 2590 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 SPG11Q96JI7 2443 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 A0A0G2JND7 137 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 CLDN24A6NM45 220 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 BCAS1O75363 584 aaPredicted RBP13.61□□□□□ -0.23
LIMS3-201ENST00000437679 BCHEP06276 602 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 TFPTP0C1Z6 253 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 RPS4Y1P22090 263 aaKnown RBP13.61□□□□□ -0.23
LIMS3-201ENST00000437679 FADDQ13158 208 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 RGNQ15493 299 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 C3orf33Q6P1S2 294 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 FAM214BQ7L5A3 538 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 SLC38A5Q8WUX1 472 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 ZNF524Q96C55 264 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 GMPPAQ96IJ6 420 aaPredicted RBP13.61□□□□□ -0.23
LIMS3-201ENST00000437679 PROCRQ9UNN8 238 aa13.61□□□□□ -0.23
LIMS3-201ENST00000437679 SS18L1O75177 396 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 TROVE2P10155 538 aaKnown RBP eCLIP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 CD8BP10966 210 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 NID1P14543 1247 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 PPIBP23284 216 aaKnown RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 APOBEC1P41238 236 aaKnown RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 KRTAP10-9P60411 292 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 GUSBP1Q15486 140 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 MAPK11Q15759 364 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 ZNF239Q16600 458 aaKnown RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 LIN52Q52LA3 116 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 LRIF1Q5T3J3 769 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 MRPL2Q5T653 305 aaKnown RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 PLEKHM3Q6ZWE6 761 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 GRINAQ7Z429 371 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 OR6K3Q8NGY3 331 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 OR52P1PQ8NH57 321 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 SLC25A43Q8WUT9 341 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 ROBO4Q8WZ75 1007 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 CNOT9Q92600 299 aaKnown RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 TMEM19Q96HH6 336 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 SLC39A3Q9BRY0 314 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 OPN3Q9H1Y3 402 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 CLEC4AQ9UMR7 237 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 SPIN1Q9Y657 262 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-201ENST00000437679 TACC2O95359 2948 aa13.6□□□□□ -0.23
LIMS3-201ENST00000437679 ANKRD17O75179 2603 aaKnown RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 A0A0G2JPF8 293 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 A0A1W2PNR3 127 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 A0A1W2PP18 115 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 HNRNPCL2B2RXH8 293 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 HNRNPCL3B7ZW38 293 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 HNRNPCL1O60812 293 aaKnown RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 HNRNPCL4P0DMR1 293 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 EPXP11678 715 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 UQCRBP14927 111 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 HOXB9P17482 250 aaPredicted RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 KCNJ5P48544 419 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 IDH2P48735 452 aaKnown RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 LARS2Q15031 903 aaKnown RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 RNPS1Q15287 305 aaKnown RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 PAGE3Q5JUK9 113 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 METTL21CQ5VZV1 264 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 ZNF440Q8IYI8 595 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 LINC01560Q8TB33 94 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 OR5B2Q96R09 309 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 SRXN1Q9BYN0 137 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 COQ10BQ9H8M1 238 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 A4GALTQ9NPC4 353 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 MED4Q9NPJ6 270 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 SLC52A3Q9NQ40 469 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 DNAJB12Q9NXW2 375 aaKnown RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 ELOVL5Q9NYP7 299 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 SLC25A37Q9NYZ2 338 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 SLAMF8Q9P0V8 285 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.59□□□□□ -0.23
LIMS3-201ENST00000437679 NDRG3Q9UGV2 375 aa13.59□□□□□ -0.23
LIMS3-201ENST00000437679 LEF1Q9UJU2 399 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms